Comparative analysis of metazoan chromatin organization Open. - Joshua Wing Kei Ho; Youngsook L. Jung; Tao Liu 022; Burak Han Alver; Soohyun Lee; Kohta Ikegami; Kyung-Ah Sohn; Aki Minoda; Michael Y. Tolstorukov; Alex Appert; Stephen C. J. Parker; Tingting Gu; et al. (Nat., 2014)

GBshape: a genome browser database for DNA shape annotations. - Tsu-Pei Chiu; Lin Yang; Tianyin Zhou; Bradley J. Main; Stephen C. J. Parker; Sergey V. Nuzhdin; Thomas D. Tullius; Remo Rohs (Nucleic Acids Res., 2015)

Harnessing Big Data for Precision Medicine: Infrastructures and Applications. - Kun-Hsing Yu; Steven N. Hart; Rachel L. Goldfeder; Qiangfeng Cliff Zhang; Stephen C. J. Parker; Michael Snyder 001 (PSB, 2017)

YAMDA: thousandfold speedup of EM-based motif discovery using deep learning libraries and GPU. - Daniel Quang; Yuanfang Guan; Stephen C. J. Parker (Bioinform., 2018)

CNTools: A computational toolbox for cellular neighborhood analysis from multiplexed images. - Yicheng Tao 002; Fan Feng; Xin Luo; Conrad V. Reihsmann; Alexander L. Hopkirk; Jean-Philippe Cartailler; Marcela Brissova; Stephen C. J. Parker; Diane C. Saunders; Jie Liu 045 (PLoS Comput. Biol., 2024)