Toward an Ontological Database for Subcellular Neuroanatomy. - Amarnath Gupta; Stephen D. Larson; Christopher Condit; Sandeep Gupta; Lisa Fong; Li Chen 027; Maryann E. Martone (ER Workshops, 2007)

An Ontology-Driven Knowledge Environment For Subcellular Neuroanatomy. - Lisa Fong; Stephen D. Larson; Amarnath Gupta; Christopher Condit; William J. Bug; Li Chen 027; Ruth West; Stephan Lamont; Masako Terada; Maryann E. Martone (OWLED, 2007)

Rule-Based Reasoning With A Multi-Scale Neuroanatomical Ontology. - Stephen D. Larson; Maryann E. Martone (OWLED, 2007)

A formal ontology of subcellular neuroanatomy. - Stephen D. Larson; Lisa Fong; Amarnath Gupta; Christopher Condit; William J. Bug; Maryann E. Martone (Frontiers Neuroinformatics, 2007)

The NIFSTD and BIRNLex Vocabularies: Building Comprehensive Ontologies for Neuroscience. - William J. Bug; Giorgio A. Ascoli; Jeffrey S. Grethe; Amarnath Gupta; Christine Fennema-Notestine; Angela R. Laird; Stephen D. Larson; Daniel L. Rubin; Gordon M. Shepherd; Jessica A. Turner; Maryann E. Martone (Neuroinformatics, 2008)

The Smart Atlas: Spatial and Semantic Strategies for Multiscale Integration of Brain Data. - Maryann E. Martone; Ilya Zaslavsky; Amarnath Gupta; Asif Memon; Joshua Tran; Willy Wong; Lisa Fong; Stephen D. Larson; Mark H. Ellisman (Anatomy Ontologies for Bioinformatics, 2008)

NeuroLex.org - A semantic wiki for neuroinformatics based on the NIF Standard Ontology. - Stephen D. Larson; Sarah Maynard; Fahim T. Imam; Maryann E. Martone (SWAT4LS, 2009)

NIFSTD and NeuroLex: Comprehensive Neuroscience Ontology Development Based on Multiple Biomedical Ontologies and Community Involvement. - Fahim T. Imam; Stephen D. Larson; Jeffrey S. Grethe; Amarnath Gupta; Anita E. Bandrowski; Maryann E. Martone (ICBO, 2011)

An Ontology-Based Approach to Linking Model Organisms and Resources to Human Diseases. - Chris Mungall; David Anderson; Anita E. Bandrowski; Brian A. Canada; Andrew Chatr-aryamontri; Keith C. Cheng; P. Michael Conn; Kara Dolinski; Mark H. Ellisman; Janan T. Eppig; Jeffrey S. Grethe; Joseph W. Kemnitz; et al. (ICBO, 2011)

Digital Atlasing and Standardization in the Mouse Brain. - Michael Hawrylycz; Richard A. Baldock; Albert Burger; Tsutomu Hashikawa; G. Allan Johnson; Maryann E. Martone; Lydia Ng; Christopher Lau; Stephen D. Larson; Jonathan Nissanov; Luis Puelles; Seth Ruffins; et al. (PLoS Comput. Biol., 2011)

Maturation of Neuroscience Information Framework: An Ontology Driven Information System for Neuroscience. - Fahim T. Imam; Stephen D. Larson; Anita E. Bandrowski; Jeffrey S. Grethe; Amarnath Gupta; Maryann E. Martone (FOIS, 2012)

Towards a virtual C. elegans: A framework for simulation and visualization of the neuromuscular system in a 3D physical environment. - Andrey Palyanov; Sergey Khayrulin; Stephen D. Larson; Alexander Dibert (Silico Biol., 2012)

NeuroLex.org: an online framework for neuroscience knowledge. - Stephen D. Larson; Maryann E. Martone (Frontiers Neuroinformatics, 2013)

OpenWorm: an open-science approach to modeling Caenorhabditis elegans. - Balazs Szigeti; Padraig Gleeson; Michael Vella; Sergey Khayrulin; Andrey Palyanov; Jim Hokanson; Michael Currie; Matteo Cantarelli; Giovanni Idili; Stephen D. Larson (Frontiers Comput. Neurosci., 2014)

Unit Testing, Model Validation, and Biological Simulation. - Gopal P. Sarma; Travis W. Jacobs; Mark D. Watts; Vahid Ghayoomi; Richard C. Gerkin; Stephen D. Larson (CoRR, 2015)

Application of smoothed particle hydrodynamics to modeling mechanisms of biological tissue. - Andrey Palyanov; Sergey Khayrulin; Stephen D. Larson (Adv. Eng. Softw., 2016)

Unit testing, model validation, and biological simulation. - Gopal P. Sarma; Travis W. Jacobs; Mark D. Watts; S. Vahid Ghayoomie; Stephen D. Larson; Richard C. Gerkin (F1000Research, 2016)