Krylov Subspace Methods for Large-Scale Constrained Sylvester Equations. - Stephen D. Shank; Valeria Simoncini (SIAM J. Matrix Anal. Appl., 2013)

Overlapping Blocks by Growing a Partition with Applications to Preconditioning. - David Fritzsche; Andreas Frommer; Stephen D. Shank; Daniel B. Szyld (SIAM J. Sci. Comput., 2013)

Efficient low-rank solution of generalized Lyapunov equations. - Stephen D. Shank; Valeria Simoncini; Daniel B. Szyld (Numerische Mathematik, 2016)

phylotree.js - a JavaScript library for application development and interactive data visualization in phylogenetics. - Stephen D. Shank; Steven Weaver; Sergei L. Kosakovsky Pond (BMC Bioinform., 2018)

Fast and accurate genome-wide predictions and structural modeling of protein-protein interactions using Galaxy. - Aysam Guerler; Dannon Baker; Marius van den Beek; Björn A. Grüning; Dave Bouvier; Nate Coraor; Stephen D. Shank; Jordan D. Zehr; Michael C. Schatz; Anton Nekrutenko (BMC Bioinform., 2023)