Conceptual modelling of genomic information. - Norman W. Paton; Shakeel A. Khan; Andrew Hayes; Fouzia Moussouni; Andy Brass; Karen Eilbeck; Carole A. Goble; Simon J. Hubbard; Stephen G. Oliver (Bioinform., 2000)

GIMS - A Data Warehouse for Storage and Analysis of Genome Sequence and Functional Data. - Mike Cornell; Norman W. Paton; Shengli Wu 001; Carole A. Goble; Crispin J. Miller; Paul Kirby; Karen Eilbeck; Andy Brass; Andrew Hayes; Stephen G. Oliver (BIBE, 2001)

Combining Inductive Logic Programming, Active Learning and Robotics to Discover the Function of Genes. - Christopher H. Bryant; Stephen H. Muggleton; Stephen G. Oliver; Douglas B. Kell; Philip G. K. Reiser; Ross D. King (Electron. Trans. Artif. Intell., 2001)

Developing a Logical Model of Yeast Metabolism. - Philip G. K. Reiser; Ross D. King; Douglas B. Kell; Stephen H. Muggleton; Christopher H. Bryant; Stephen G. Oliver (Electron. Trans. Artif. Intell., 2001)

SiteSeer: visualisation and analysis of transcription factor binding sites in nucleotide sequences. - Paul E. Boardman; Stephen G. Oliver; Simon J. Hubbard (Nucleic Acids Res., 2003)

Pedro: a configurable data entry tool for XML. - Kevin L. Garwood; Chris F. Taylor; Kai J. Runte; Andy Brass; Stephen G. Oliver; Norman W. Paton (Bioinform., 2004)

CADRE: the Central Aspergillus Data REpository. - J. E. Mabey; M. J. Anderson; Peter F. Giles; Crispin J. Miller; Terri K. Attwood; Norman W. Paton; Erich Bornberg-Bauer; G. D. Robson; Stephen G. Oliver; David W. Denning (Nucleic Acids Res., 2004)

Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it. - Kevin L. Garwood; Christopher Garwood; Cornelia Hedeler; Tony Griffiths; Neil Swainston; Stephen G. Oliver; Norman W. Paton (BMC Bioinform., 2006)

Integrative investigation of metabolic and transcriptomic data. - Pinar Pir; Betül Kirdar; Andrew Hayes; Z. Ilsen Önsan; Kutlu Ö. Ülgen; Stephen G. Oliver (BMC Bioinform., 2006)

MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics. - Irena Spasic; Warwick B. Dunn; Giles Velarde; Andy Tseng; Helen Jenkins; Nigel Hardy; Stephen G. Oliver; Douglas B. Kell (BMC Bioinform., 2006)

A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network. - Grigoris D. Amoutzias; Elgar Pichler; Nina Mian; David De Graaf; Anastasia Imsiridou; Marc Robinson-Rechavi; Erich Bornberg-Bauer; David L. Robertson; Stephen G. Oliver (BMC Syst. Biol., 2007)

Similarity in expression accounts for correlated evolution of interacting proteins. - Luke Hakes; Simon C. Lovell; Stephen G. Oliver; David L. Robertson (BMC Syst. Biol., 2007)

A Methodology for Comparative Functional Genomics. - Intikhab Alam; Mike Cornell; Darren M. Soanes; Cornelia Hedeler; Han Min Wong; Magnus Rattray; Simon J. Hubbard; Nicholas J. Talbot; Stephen G. Oliver; Norman W. Paton (J. Integr. Bioinform., 2007)

Data capture in bioinformatics: requirements and experiences with Pedro. - Daniel Jameson; Kevin L. Garwood; Christopher Garwood; Tim Booth; Pinar Alper; Stephen G. Oliver; Norman W. Paton (BMC Bioinform., 2008)

Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data. - Peter Li; Juan I. Castrillo; Giles Velarde; Ingo Wassink; Stian Soiland-Reyes; Stuart Owen; David Withers; Tom Oinn; Matthew R. Pocock; Carole A. Goble; Stephen G. Oliver; Douglas B. Kell (BMC Bioinform., 2008)

ISPIDER Central: an integrated database web-server for proteomics. - Jennifer A. Siepen; Khalid Belhajjame; Julian N. Selley; Suzanne M. Embury; Norman W. Paton; Carole A. Goble; Stephen G. Oliver; Robert Stevens 001; Lucas Zamboulis; Nigel J. Martin 001; Alexandra Poulovassilis; Philip Jones; et al. (Nucleic Acids Res., 2008)

Information management for high content live cell imaging. - Daniel Jameson; David A. Turner; John Ankers; Stephnie Kennedy; Sheila Ryan; Neil Swainston; Tony Griffiths; David G. Spiller; Stephen G. Oliver; Michael R. H. White; Douglas B. Kell; Norman W. Paton (BMC Bioinform., 2009)

The Robot Scientist Adam. - Ross D. King; Jem J. Rowland; Wayne Aubrey; Maria Liakata; Magdalena Markham; Larisa N. Soldatova; Ken E. Whelan; Amanda Clare; Mike Young; Andrew Sparkes; Stephen G. Oliver; Pinar Pir (Computer, 2009)

Further developments towards a genome-scale metabolic model of yeast. - Paul D. Dobson; Kieran Smallbone; Daniel Jameson; Evangelos Simeonidis; Karin Lanthaler; Pinar Pir; Chuan Lu; Neil Swainston; Warwick B. Dunn; Paul Fisher; Duncan Hull; Marie Brown; et al. (BMC Syst. Biol., 2010)

The role of proteosome-mediated proteolysis in modulating potentially harmful transcription factor activity in Saccharomyces cerevisiae. - Nicola Bonzanni; Nianshu Zhang; Stephen G. Oliver; Jasmin Fisher (Bioinform., 2011)

How yeast re-programmes its transcriptional profile in response to different nutrient impulses. - Duygu Dikicioglu; Muhammed Erkan Karabekmez; Bharat Rash; Pinar Pir; Betül Kirdar; Stephen G. Oliver (BMC Syst. Biol., 2011)

The genetic control of growth rate: a systems biology study in yeast. - Pinar Pir; Alex Gutteridge; Jian Wu; Bharat Rash; Douglas B. Kell; Nianshu Zhang; Stephen G. Oliver (BMC Syst. Biol., 2012)

PomBase: a comprehensive online resource for fission yeast. - Valerie Wood; Midori A. Harris; Mark D. McDowall; Kim Rutherford; Brendan W. Vaughan; Daniel M. Staines; Martin Aslett; Antonia Lock; Jürg Bähler; Paul J. Kersey; Stephen G. Oliver (Nucleic Acids Res., 2012)

FYPO: the fission yeast phenotype ontology. - Midori A. Harris; Antonia Lock; Jürg Bähler; Stephen G. Oliver; Valerie Wood (Bioinform., 2013)

Canto: an online tool for community literature curation. - Kim M. Rutherford; Midori A. Harris; Antonia Lock; Stephen G. Oliver; Valerie Wood (Bioinform., 2014)

The Challenges of Interpreting Phosphoproteomics Data: A Critical View Through the Bioinformatics Lens. - Panayotis Vlastaridis; Stephen G. Oliver; Yves Van de Peer; Grigoris D. Amoutzias (CIBB, 2015)

PomBase 2015: updates to the fission yeast database. - Mark D. McDowall; Midori A. Harris; Antonia Lock; Kim Rutherford; Daniel M. Staines; Jürg Bähler; Paul J. Kersey; Stephen G. Oliver; Valerie Wood (Nucleic Acids Res., 2015)

Quantifying Two-Dimensional Filamentous and Invasive Growth Spatial Patterns in Yeast Colonies. - Benjamin J. Binder; Joanna F. Sundstrom; Jennifer M. Gardner; Vladimir Jiranek; Stephen G. Oliver (PLoS Comput. Biol., 2015)

CLUSTERnGO: a user-defined modelling platform for two-stage clustering of time-series data. - Isik Baris Fidaner; Ayca Cankorur-Cetinkaya; Duygu Dikicioglu; Betül Kirdar; Ali Taylan Cemgil; Stephen G. Oliver (Bioinform., 2016)

TAMMiCol: Tool for analysis of the morphology of microbial colonies. - Hayden Tronnolone; Jennifer M. Gardner; Joanna F. Sundstrom; Vladimir Jiranek; Stephen G. Oliver; Benjamin J. Binder (PLoS Comput. Biol., 2018)

Flexible Nets: a modeling formalism for dynamic systems with uncertain parameters. - Jorge Júlvez; Stephen G. Oliver (Discret. Event Dyn. Syst., 2019)

PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information. - Antonia Lock; Kim Rutherford; Midori A. Harris; Jacqueline Hayles; Stephen G. Oliver; Jürg Bähler; Valerie Wood (Nucleic Acids Res., 2019)

fnyzer: A Python Package for the Analysis of Flexible Nets. - Jorge Júlvez; Stephen G. Oliver (CMSB, 2020)

Steady State Analysis of Flexible Nets. - Jorge Júlvez; Stephen G. Oliver (IEEE Trans. Autom. Control., 2020)

Extending the Modeling and Analysis Capabilities of Continuous Petri Nets by Flexible Nets. - Jorge Júlvez; Stephen G. Oliver (CDC, 2021)

Data intelligence for process performance prediction in biologics manufacturing. - Nishanthi Gangadharan; David Sewell; Richard Turner; Ray Field; Matthew Cheeks; Stephen G. Oliver; Nigel K. H. Slater; Duygu Dikicioglu (Comput. Chem. Eng., 2021)

The Gene Ontology resource: enriching a GOld mine. - Seth Carbon; Eric Douglass; Benjamin M. Good; Deepak R. Unni; Nomi L. Harris; Christopher J. Mungall; Siddartha Basu; Rex L. Chisholm; Robert J. Dodson; Eric Hartline; Petra Fey; Paul D. Thomas; et al. (Nucleic Acids Res., 2021)