Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition. - Yuliya V. Karpievitch; Thomas Taverner; Joshua N. Adkins; Stephen J. Callister; Gordon A. Anderson; Richard D. Smith; Alan R. Dabney (Bioinform., 2009)

Proteotyping of Microbial Communities by Optimization of Tandem Mass Spectrometry Data Interpretation. - Alys Hugo; Douglas J. Baxter; William R. Cannon; Ananth Kalyanaraman; Gaurav Ramesh Kulkarni; Stephen J. Callister (Pacific Symposium on Biocomputing, 2012)

SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes. - Darren S. Curtis; Aaron R. Phillips; Stephen J. Callister; Sean Conlan; Lee Ann McCue (Bioinform., 2013)

MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis. - Brian L. LaMarche; Kevin L. Crowell; Navdeep Jaitly; Vladislav A. Petyuk; Anuj R. Shah; Ashoka D. Polpitiya; John D. Sandoval; Gary R. Kiebel; Matthew E. Monroe; Stephen J. Callister; Thomas O. Metz; Gordon A. Anderson; et al. (BMC Bioinform., 2013)