A parallel Monte Carlo search algorithm for the conformational analysis of proteins. - Daniel R. Ripoll; Stephen J. Thomas (SC, 1990)

A parallel Monte Carlo search algorithm for the conformational analysis of polypeptides. - Daniel R. Ripoll; Stephen J. Thomas (J. Supercomput., 1992)

Parallel Semi-Lagrangian Advection using PVM. - Stephen J. Thomas; J. Côté (EUROSIM, 1994)

Massively parallel semi-Lagrangian advection. - Stephen J. Thomas; J. Côté (Simul. Pract. Theory, 1995)

Parallel simulation of compressible atmospheric flows: bubble convection. - Andrei V. Malevsky; Stephen J. Thomas; Robert Benoit; Michel Desgagné; Pierre Pellerin (EUROSIM, 1996)

Massively Parallel Implementation of the Mesoscale Compressible Community Model. - Stephen J. Thomas; Andrei V. Malevsky; Michel Desgagné; Robert Benoit; Pierre Pellerin; Michel Valin (Parallel Comput., 1997)

Parallel Semi-Implicit Spectral Element Methods for Atmospheric General Circulation Models. - Stephen J. Thomas; Richard D. Loft (J. Sci. Comput., 2000)

Performance of MC2 and the ECMWF IFS forecast model on the Fujitsu VPP700 and NEC SX-4M. - Michel Desgagné; Stephen J. Thomas; Michel Valin (Sci. Program., 2000)

Terascale spectral element dynamical core for atmospheric general circulation models. - Richard D. Loft; Stephen J. Thomas; John M. Dennis (SC, 2001)

Parallel implementation issues: global versus local methods. - Stephen J. Thomas; Richard D. Loft; John M. Dennis (Comput. Sci. Eng., 2002)

Semi-Implicit Spectral Element Atmospheric Model. - Stephen J. Thomas; Richard D. Loft (J. Sci. Comput., 2002)

A Schwarz Preconditioner for the Cubed-Sphere. - Stephen J. Thomas; John M. Dennis; Henry M. Tufo; Paul F. Fischer (SIAM J. Sci. Comput., 2003)

High-Order Finite Element Methods for Parallel Atmospheric Modeling. - Amik St.-Cyr; Stephen J. Thomas (International Conference on Computational Science (1), 2005)

Nonlinear OIFS for a Hybrid Galerkin Atmospheric Model. - Amik St.-Cyr; Stephen J. Thomas (International Conference on Computational Science (3), 2005)

On the Accuracy of High-Order Finite Elements in Curvilinear Coordinates. - Stephen J. Thomas; Amik St.-Cyr (International Conference on Computational Science (2), 2005)

High-Resolution Mesh Convergence Properties and Parallel Efficiency of a Spectral Element Atmospheric Dynamical Core. - John M. Dennis; Aimé Fournier; William F. Spotz; Amik St.-Cyr; Mark A. Taylor; Stephen J. Thomas; Henry M. Tufo (Int. J. High Perform. Comput. Appl., 2005)

The NCAR Spectral Element Climate Dynamical Core: Semi-Implicit Eulerian Formulation. - Stephen J. Thomas; Richard D. Loft (J. Sci. Comput., 2005)

Optimized Multiplicative, Additive, and Restricted Additive Schwarz Preconditioning. - Amik St.-Cyr; Martin J. Gander; Stephen J. Thomas (SIAM J. Sci. Comput., 2007)

Real-Time Robust Image Feature Description and Matching. - Stephen J. Thomas; Bruce A. MacDonald; Karl A. Stol (ACCV (2), 2010)

A Real-Time Method to Detect and Track Moving Objects (DATMO) from Unmanned Aerial Vehicles (UAVs) Using a Single Camera. - Gonzalo R. Rodríguez-Canosa; Stephen J. Thomas; Jaime del Cerro; Antonio Barrientos; Bruce A. MacDonald (Remote. Sens., 2012)

Low synchronization GMRES algorithms. - Kasia Swirydowicz; Julien Langou; Shreyas Ananthan; Ulrike Meier Yang; Stephen J. Thomas (CoRR, 2018)

A Comparison of Classical and Aggregation-Based Algebraic Multigrid Preconditioners for High-Fidelity Simulation of Wind Turbine Incompressible Flows. - Stephen J. Thomas; Shreyas Ananthan; Shashank Yellapantula; Jonathan J. Hu; Michael Lawson; Mary Ann Sprague (SIAM J. Sci. Comput., 2019)

Low-synchronization orthogonalization schemes for s-step and pipelined Krylov solvers in Trilinos. - Ichitaro Yamazaki; Stephen J. Thomas; Mark Hoemmen; Erik G. Boman; Katarzyna Swirydowicz; James J. Elliott (PP, 2020)

A Survey of Numerical Methods Utilizing Mixed Precision Arithmetic. - Ahmad Abdelfattah; Hartwig Anzt; Erik G. Boman; Erin C. Carson; Terry Cojean; Jack J. Dongarra; Mark Gates; Thomas Grützmacher; Nicholas J. Higham; Xiaoye Sherry Li; Neil Lindquist; Yang Liu 179; et al. (CoRR, 2020)

An overview of block Gram-Schmidt methods and their stability properties. - Erin C. Carson; Kathryn Lund; Miroslav Rozlozník; Stephen J. Thomas (CoRR, 2020)

Preparing an incompressible-flow fluid dynamics code for exascale-class wind energy simulations. - Paul Mullowney; Ruipeng Li; Stephen J. Thomas; Shreyas Ananthan; Ashesh Sharma; Jon S. Rood; Alan B. Williams; Michael A. Sprague (SC, 2021)

Two-Stage Gauss-Seidel Preconditioners and Smoothers for Krylov Solvers on a GPU cluster. - Luc Berger-Vergiat; Brian Kelley; Sivasankaran Rajamanickam; Jonathan J. Hu; Katarzyna Swirydowicz; Paul Mullowney; Stephen J. Thomas; Ichitaro Yamazaki (CoRR, 2021)

ILUT Smoothers for Hybrid C-AMG with Scaled Triangular Factors. - Stephen J. Thomas; Arielle Carr; Kasia Swirydowicz; Marc Day (CoRR, 2021)

Neumann Series in GMRES and Algebraic Multigrid Smoothers. - Stephen J. Thomas; Arielle Carr; Paul Mullowney; Ruipeng Li; Kasia Swirydowicz (CoRR, 2021)

A survey of numerical linear algebra methods utilizing mixed-precision arithmetic. - Ahmad Abdelfattah; Hartwig Anzt; Erik G. Boman; Erin C. Carson; Terry Cojean; Jack J. Dongarra; Alyson Fox; Mark Gates; Nicholas J. Higham; Xiaoye S. Li; Jennifer A. Loe; Piotr Luszczek; et al. (Int. J. High Perform. Comput. Appl., 2021)

Overset meshes for incompressible flows: On preserving accuracy of underlying discretizations. - Ashesh Sharma; Shreyas Ananthan; Jayanarayanan Sitaraman; Stephen J. Thomas; Michael A. Sprague (J. Comput. Phys., 2021)

Low synchronization Gram-Schmidt and generalized minimal residual algorithms. - Katarzyna Swirydowicz; Julien Langou; Shreyas Ananthan; Ulrike Meier Yang; Stephen J. Thomas (Numer. Linear Algebra Appl., 2021)

Post-Modern GMRES. - Stephen J. Thomas; Erin C. Carson; Miro Rozlozník; Arielle Carr; Kasia Swirydowicz (CoRR, 2022)

Low-synch Gram-Schmidt with delayed reorthogonalization for Krylov solvers. - Daniel Bielich; Julien Langou; Stephen J. Thomas; Kasia Swirydowicz; Ichitaro Yamazaki; Erik G. Boman (Parallel Comput., 2022)

Linear solvers for power grid optimization problems: A review of GPU-accelerated linear solvers. - Kasia Swirydowicz; Eric Darve; Wesley B. Jones; Jonathan Maack; Shaked Regev; Michael A. Saunders; Stephen J. Thomas; Slaven Peles (Parallel Comput., 2022)

Iterated Gauss-Seidel GMRES. - Stephen J. Thomas; Erin C. Carson; Miroslav Rozlozník; Arielle Carr; Katarzyna Swirydowicz (SIAM J. Sci. Comput., 2024)

Augmented MGS-CGS Block-Arnoldi Recycling Solvers. - Stephen J. Thomas; Allison H. Baker; Stéphane Gaudreault (SIAM J. Sci. Comput., 2025)