Signal processing techniques in genomic engineering. - Xin-Yun Zhang; Fei Chen 011; Yuan-Ting Zhang; Shannon C. Agner; Metin Akay; Zu-Hong Lu; Mary Miu Yee Waye; Stephen Kwok-Wing Tsui (Proc. IEEE, 2002)

High-throughput DNA sequencing and bioinformatics: Bottlenecks and opportunities. - Stephen Kwok-Wing Tsui (GrC, 2009)

alns - A searchable and filterable sequence alignment format. - Ross K. K. Leung; Stephen Kwok-Wing Tsui (BIBM, 2010)

Inferring Protein-Protein Interactions Based on Sequences and Interologs in Mycobacterium Tuberculosis. - Zhi-Ping Liu; Jiguang Wang; Yu-Qing Qiu; Ross K. K. Leung; Xiang-Sun Zhang; Stephen Kwok-Wing Tsui; Luonan Chen (ICIC (3), 2011)

Discovering approximate-associated sequence patterns for protein-DNA interactions. - Tak-Ming Chan; Ka-Chun Wong; Kin-Hong Lee; Man Hon Wong 001; Chi-Kong Lau; Stephen Kwok-Wing Tsui; Kwong-Sak Leung (Bioinform., 2011)

ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping. - Shao-Ke Lou; Bing Ni; Leung-Yau Lo; Stephen Kwok-Wing Tsui; Ting-Fung Chan; Kwong-Sak Leung (Bioinform., 2011)

Detection of splicing events and multiread locations from RNA-seq data based on a geometric-tail (GT) distribution of intron length. - Shao-Ke Lou; Jing-Woei Li; Hao Qin; Aldrin Kay-Yuen Yim; Leung-Yau Lo; Bing Ni; Kwong-Sak Leung; Stephen Kwok-Wing Tsui; Ting-Fung Chan (BMC Bioinform., 2011)

Data Mining on DNA Sequences of Hepatitis B Virus. - Kwong-Sak Leung; Kin-Hong Lee; Jinfeng Wang 003; Eddie Y. T. Ng; Henry L. Y. Chan; Stephen Kwok-Wing Tsui; Tony Shu Kam Mok; Pete Chi-Hang Tse; Joseph J. Y. Sung (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs. - Zhi-Ping Liu; Jiguang Wang; Yu-Qing Qiu; Ross K. K. Leung; Xiang-Sun Zhang; Stephen Kwok-Wing Tsui; Luonan Chen (BMC Bioinform., 2012)

iMOWSE, a scoring scheme bridging in silico and in vitro digestion in PMF. - Ross K. K. Leung; Stephen Kwok-Wing Tsui (Int. J. Data Min. Bioinform., 2012)

Alns: a new searchable and filterable sequence alignment format. - Ross K. K. Leung; Stephen Kwok-Wing Tsui (Int. J. Data Min. Bioinform., 2013)

In silico analysis of proteins and microRNAs related to human African trypanosomiasis in tsetse fly. - Zhiyuan Yang; Mingqiang Wang; Xi Zeng; Angel Tsz-Yau Wan; Stephen Kwok-Wing Tsui (Comput. Biol. Chem., 2020)

meGPS: a multi-omics signature for hepatocellular carcinoma detection integrating methylome and transcriptome data. - Qiong Wu; Xubin Zheng; Kwong-Sak Leung; Man Hon Wong 001; Stephen Kwok-Wing Tsui; Lixin Cheng (Bioinform., 2022)

Reusability report: Capturing properties of biological objects and their relationships using graph neural networks. - Chenyang Hong; Qin Cao; Zhenghao Zhang; Stephen Kwok-Wing Tsui; Kevin Y. Yip (Nat. Mach. Intell., 2022)

Editorial. - Stephen Kwok-Wing Tsui (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Driving Accurate Allergen Prediction with Protein Language Models and Generalization-Focused Evaluation. - Brian Shing-Hei Wong; Joshua Mincheol Kim; Sin-Hang Fung; Qing Xiong; Kelvin Fu-Kiu Ao; Junkang Wei; Ran Wang; Dan Michelle Wang; Jingying Zhou; Bo Feng; Alfred Sze-Lok Cheng; Kevin Y. Yip; et al. (CoRR, 2025)