Radical performance enhancements for combinatorial optimization algorithms based on the dead-end elimination theorem. - D. Benjamin Gordon; Stephen L. Mayo (J. Comput. Chem., 1998)

Conformational splitting: A more powerful criterion for dead-end elimination. - Niles A. Pierce; Jan A. Spriet; J. Desmet; Stephen L. Mayo (J. Comput. Chem., 2000)

Exact rotamer optimization for protein design. - D. Benjamin Gordon; Geoffrey K. Hom; Stephen L. Mayo; Niles A. Pierce (J. Comput. Chem., 2003)

Preprocessing of rotamers for protein design calculations. - Premal S. Shah; Geoffrey K. Hom; Stephen L. Mayo (J. Comput. Chem., 2004)

Adaptation of a fast Fourier transform-based docking algorithm for protein design. - Po-Ssu Huang; John J. Love; Stephen L. Mayo (J. Comput. Chem., 2005)

Dramatic performance enhancements for the FASTER optimization algorithm. - Benjamin D. Allen; Stephen L. Mayo (J. Comput. Chem., 2006)

A search algorithm for fixed-composition protein design. - Geoffrey K. Hom; Stephen L. Mayo (J. Comput. Chem., 2006)

An improved pairwise decomposable finite-difference Poisson-Boltzmann method for computational protein design. - Christina L. Vizcarra; Naigong Zhang; Shannon A. Marshall; Ned S. Wingreen; Chen Zeng; Stephen L. Mayo (J. Comput. Chem., 2008)

An efficient algorithm for multistate protein design based on FASTER. - Benjamin D. Allen; Stephen L. Mayo (J. Comput. Chem., 2010)

GRID: A high-resolution protein structure refinement algorithm. - Mohsen Chitsaz; Stephen L. Mayo (J. Comput. Chem., 2013)

Computational design of co-assembling protein-DNA nanowires. - Yun Mou; Jiun-Yann Yu; Timothy M. Wannier; Chin-Lin Guo; Stephen L. Mayo (Nat., 2015)