Dynamic querying for pattern identification in microarray and genomic data. - Harry Hochheiser; Eric H. Baehrecke; Stephen M. Mount; Ben Shneiderman (ICME, 2003)

Reducing storage requirements for biological sequence comparison. - Michael Roberts; Wayne B. Hayes; Brian R. Hunt; Stephen M. Mount; James A. Yorke (Bioinform., 2004)

Features generated for computational splice-site prediction correspond to functional elements. - Rezarta Islamaj Dogan; Lise Getoor; W. John Wilbur; Stephen M. Mount (BMC Bioinform., 2007)

A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana. - Mihaela Pertea; Stephen M. Mount; Steven L. Salzberg (BMC Bioinform., 2007)

SplicePort - An interactive splice-site analysis tool. - Rezarta Islamaj Dogan; Lise Getoor; W. John Wilbur; Stephen M. Mount (Nucleic Acids Res., 2007)

Sailfish: Alignment-free Isoform Quantification from RNA-seq Reads using Lightweight Algorithms. - Rob Patro; Stephen M. Mount; Carl Kingsford (CoRR, 2013)

Evaluation of BLAST-based edge-weighting metrics used for homology inference with the Markov Clustering algorithm. - Theodore Gibbons; Stephen M. Mount; Endymion Cooper; Charles F. Delwiche (BMC Bioinform., 2015)

Erratum to: Evaluation of BLAST-based edge-weighting metrics used for homology inference with the Markov Clustering algorithm. - Theodore Gibbons; Stephen M. Mount; Endymion Cooper; Charles F. Delwiche (BMC Bioinform., 2015)

Yanagi: Transcript Segment Library Construction for RNA-Seq Quantification. - Mohamed K. Gunady; Steffen Cornwell; Stephen M. Mount; Héctor Corrada Bravo (WABI, 2017)

Yanagi: Fast and interpretable segment-based alternative splicing and gene expression analysis. - Mohamed K. Gunady; Stephen M. Mount; Héctor Corrada Bravo (BMC Bioinform., 2019)