Identification of Genome-Scale Metabolic Network Models Using Experimentally Measured Flux Profiles. - Markus J. Herrgård; Stephen S. Fong; Bernhard Ø. Palsson (PLoS Comput. Biol., 2006)

Genome-scale metabolic analysis of Clostridium thermocellum for bioethanol production. - Seth B. Roberts; Chris M. Gowen; J. Paul Brooks; Stephen S. Fong (BMC Syst. Biol., 2010)

Gap Detection for Genome-Scale Constraint-Based Models. - J. Paul Brooks; William P. Burns; Stephen S. Fong; Chris M. Gowen; Seth B. Roberts (Adv. Bioinformatics, 2012)

Decomposition of Flux Distributions into Metabolic Pathways. - Onur Seref; J. Paul Brooks; Stephen S. Fong (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Proteomics-based metabolic modeling and characterization of the cellulolytic bacterium Thermobifida fusca. - Niti Vanee; J. Paul Brooks; Victor Spicer; Dmitriy Shamshurin; Oleg Krokhin; John A. Wilkins; Yu Deng; Stephen S. Fong (BMC Syst. Biol., 2014)

Genome-scale resources for Thermoanaerobacterium saccharolyticum. - Devin H. Currie; Babu Raman; Christopher M. Gowen; Timothy J. Tschaplinski; Miriam L. Land; Steven D. Brown; Sean F. Covalla; Dawn M. Klingeman; Zamin K. Yang; Nancy L. Engle; Courtney M. Johnson; Miguel Rodriguez; et al. (BMC Syst. Biol., 2015)

Enumeration and Cartesian Product Decomposition of Alternate Optimal Fluxes in Cellular Metabolism. - Onur Seref; J. Paul Brooks; Bernice Huang; Stephen S. Fong (INFORMS J. Comput., 2017)

Metabolic characterization of the chitinolytic bacterium Serratia marcescens using a genome-scale metabolic model. - Qiang Yan 004; Seth B. Roberts; J. Paul Brooks; Stephen S. Fong (BMC Bioinform., 2019)