Identification of Post-Translational Modifications via Blind Search of Mass-Spectra. - Dekel Tsur; Stephen Tanner; Ebrahim Zandi; Vineet Bafna; Pavel A. Pevzner (CSB, 2005)

Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry. - Ari Frank; Stephen Tanner; Pavel A. Pevzner (RECOMB, 2005)

Canvas: versatile and scalable detection of copy number variants. - Eric Roller; Sergii Ivakhno; Steve Lee; Thomas Royce; Stephen Tanner (Bioinform., 2016)

tHapMix: simulating tumour samples through haplotype mixtures. - Sergii Ivakhno; Camilla Colombo; Stephen Tanner; Philip Tedder; Stefano Berri; Anthony J. Cox (Bioinform., 2017)