Application Domains: The Human Genome Project. - Lap Chee Tsui; Stephen W. Scherer (Essentials of Genomics and Bioinformatics, 2002)

Genescript: DNA Sequence Annotation Pipeline. - Alexander K. Hudek; Joseph Cheung; Andrew P. Boright; Stephen W. Scherer (Bioinform., 2003)

A Scan Statistic to Extract Causal Gene Clusters from Case-Control Genome-wide Rare CNV Data. - Takeshi Nishiyama; Kunihiko Takahashi; Toshiro Tango; Dalila Pinto; Stephen W. Scherer; Satoshi Takami; Hirohisa Kishino (BMC Bioinform., 2011)

The Database of Genomic Variants: a curated collection of structural variation in the human genome. - Jeffrey R. MacDonald; Robert Ziman; Ryan K. C. Yuen; Lars Feuk; Stephen W. Scherer (Nucleic Acids Res., 2014)

VikNGS: a C++ variant integration kit for next generation sequencing association analysis. - Zeynep Baskurt; Scott Mastromatteo; Jiafen Gong; Richard F. Wintle; Stephen W. Scherer; Lisa J. Strug (Bioinform., 2020)