Gene Vector Analysis (Geneva): A unified method to detect differentially-regulated gene sets and similar microarray experiments. - Stephen W. Tanner; Pankaj Agarwal (BMC Bioinform., 2008)

Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms. - Come Raczy; Roman Petrovski; Christopher T. Saunders; Ilya Chorny; Semyon Kruglyak; Elliott H. Margulies; Han-Yu Chuang; Morten Källberg; Swathi A. Kumar; Arnold Liao; Kristina M. Little; Michael P. Strömberg; et al. (Bioinform., 2013)