Ridge regression based hybrid genetic algorithms for multi-locus quantitative trait mapping. - Bin Zhang 002; Steve Horvath (Int. J. Bioinform. Res. Appl., 2005)

The Relationship Between Intramodular Connectivity and Gene Significance in Co-Expression Networks. - Steve Horvath; Jun Dong; Andy M. Yip (BIOCOMP, 2006)

The Multi-Node Topological Overlap Measure For Gene Neighborhood Analysis. - Ai Li; Steve Horvath (BIOCOMP, 2006)

The Generalized Topological Overlap Matrix for Detecting Modules in Gene Networks. - Andy M. Yip; Steve Horvath (BIOCOMP, 2006)

A Network-Based Gene Screening Approach For Improving the Validation Success of Microarrays. - Wei Zhao; Paul Mischel; Marc Carlson; Bin Zhang 002; Stanley Nelson; Steve Horvath (BIOCOMP, 2006)

Network neighborhood analysis with the multi-node topological overlap measure. - Ai Li; Steve Horvath (Bioinform., 2007)

Gene network interconnectedness and the generalized topological overlap measure. - Andy M. Yip; Steve Horvath (BMC Bioinform., 2007)

Understanding network concepts in modules. - Jun Dong; Steve Horvath (BMC Syst. Biol., 2007)

Eigengene networks for studying the relationships between co-expression modules. - Peter Langfelder; Steve Horvath (BMC Syst. Biol., 2007)

Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R. - Peter Langfelder; Bin Zhang 002; Steve Horvath (Bioinform., 2008)

WGCNA: an R package for weighted correlation network analysis. - Peter Langfelder; Steve Horvath (BMC Bioinform., 2008)

Using genetic markers to orient the edges in quantitative trait networks: The NEO software. - Jason E. Aten; Tova Fuller; Aldons J. Lusis; Steve Horvath (BMC Syst. Biol., 2008)

Integrated Weighted Gene Co-expression Network Analysis with an Application to Chronic Fatigue Syndrome. - Angela P. Presson; Eric M. Sobel; Jeanette C. Papp; Charlyn J. Suarez; Toni Whistler; Mangalathu S. Rajeevan; Suzanne D. Vernon; Steve Horvath (BMC Syst. Biol., 2008)

Geometric Interpretation of Gene Coexpression Network Analysis. - Steve Horvath; Jun Dong (PLoS Comput. Biol., 2008)

Comparing Robust Methods for Defining Directed Networks and Their Hub Nodes. - Peter Langfelder; Tova Fuller; Steve Horvath (BIOCOMP, 2010)

Detecting network modules in fMRI time series: A weighted network analysis approach. - Jeanette A. Mumford; Steve Horvath; Michael C. Oldham; Peter Langfelder; Daniel H. Geschwind; Russell A. Poldrack (NeuroImage, 2010)

Review of Weighted Gene Coexpression Network Analysis. - Tova Fuller; Peter Langfelder; Angela P. Presson; Steve Horvath (Handbook of Statistical Bioinformatics, 2011)

Strategies for aggregating gene expression data: The collapseRows R function. - Jeremy A. Miller; Chaochao Cai; Peter Langfelder; Daniel H. Geschwind; Sunil M. Kurian; Daniel R. Salomon; Steve Horvath (BMC Bioinform., 2011)

Gene networks associated with conditional fear in mice identified using a systems genetics approach. - Christopher C. Park; Greg D. Gale; Simone de Jong; Anatole Ghazalpour; Brian J. Bennett; Charles R. Farber; Peter Langfelder; Andy Lin; Arshad H. Khan; Eleazar Eskin; Steve Horvath; Aldons J. Lusis; et al. (BMC Syst. Biol., 2011)

Is My Network Module Preserved and Reproducible? - Peter Langfelder; Rui Luo; Michael C. Oldham; Steve Horvath (PLoS Comput. Biol., 2011)

Comparison of co-expression measures: mutual information, correlation, and model based indices. - Lin Song; Peter Langfelder; Steve Horvath (BMC Bioinform., 2012)

Network methods for describing sample relationships in genomic datasets: application to Huntington's disease. - Michael C. Oldham; Peter Langfelder; Steve Horvath (BMC Syst. Biol., 2012)

Distinct Neurogenomic States in Basal Ganglia Subregions Relate Differently to Singing Behavior in Songbirds. - Austin T. Hilliard; Julie E. Miller; Steve Horvath; Stephanie A. White (PLoS Comput. Biol., 2012)

Random generalized linear model: a highly accurate and interpretable ensemble predictor. - Lin Song; Peter Langfelder; Steve Horvath (BMC Bioinform., 2013)

Cluster and propensity based approximation of a network. - John M. O. Ranola; Peter Langfelder; Kenneth Lange; Steve Horvath (BMC Syst. Biol., 2013)

Comparative epigenome analysis using Infinium DNA methylation BeadChips. - Wubin Ding; Diljeet Kaur; Steve Horvath; Wanding Zhou (Briefings Bioinform., 2023)

AESurv: autoencoder survival analysis for accurate early prediction of coronary heart disease. - Yike Shen; Arce Domingo-Relloso; Allison Kupsco; Marianthi-Anna Kioumourtzoglou; Maria Tellez-Plaza; Jason G. Umans; Amanda M. Fretts; Ying Zhang; Peter F. Schnatz; Ramon Casanova; Lisa Warsinger Martin; Steve Horvath; et al. (Briefings Bioinform., 2024)

Decreased but persistent epigenetic age acceleration is associated with changes in T-cell subsets after initiation of highly active antiretroviral therapy in persons living with HIV. - Mary E. Sehl; Elizabeth Crabb Breen; Roger Shih; Fengxue Li; Joshua Zhang; Peter Langfelder; Steve Horvath; Jay H. Bream; Priya Duggal; Jeremy Martinson; Steven M. Wolinsky; Otoniel Martinez-Maza; et al. (Frontiers Bioinform., 2024)

Effects of highly active antiretroviral therapy initiation on epigenomic DNA methylation in persons living with HIV. - Joshua Zhang; Mary E. Sehl; Roger Shih; Elizabeth Crabb Breen; Fengxue Li; Ake T. Lu; Jay H. Bream; Priya Duggal; Jeremy Martinson; Steven M. Wolinsky; Otoniel Martinez-Maza; Christina M. Ramirez; et al. (Frontiers Bioinform., 2024)