Detecting single-feature polymorphisms using oligonucleotide arrays and robustified projection pursuit. - Xinping Cui; Jin Xu; Rehana Asghar; Pascal Condamine; Jan T. Svensson; Steve Wanamaker; Nils Stein; Mikeal Roose; Timothy J. Close (Bioinform., 2005)

Barcoding-free BAC Pooling Enables Combinatorial Selective Sequencing of the Barley Gene Space - Stefano Lonardi; Denisa Duma; Matthew Alpert; Francesca Cordero; Marco Beccuti; Prasanna Bhat; Yonghui Wu; Gianfranco Ciardo; Burair Alsaihati; Yaqin Ma; Steve Wanamaker; Josh Resnik; et al. (CoRR, 2011)

Combinatorial Pooling Enables Selective Sequencing of the Barley Gene Space. - Stefano Lonardi; Denisa Duma; Matthew Alpert; Francesca Cordero; Marco Beccuti; Prasanna R. Bhat; Yonghui Wu; Gianfranco Ciardo; Burair Alsaihati; Yaqin Ma; Steve Wanamaker; Josh Resnik; et al. (PLoS Comput. Biol., 2013)

CLARK, accurate and efficient classification of DNA sequences. - Rachid Ounit; Timothy J. Close; Steve Wanamaker; Stefano Lonardi (BCB, 2014)

When less is more: 'slicing' sequencing data improves read decoding accuracy and de novo assembly quality. - Stefano Lonardi; Seyed Hamid Mirebrahim; Steve Wanamaker; Matthew Alpert; Gianfranco Ciardo; Denisa Duma; Timothy J. Close (Bioinform., 2015)

Novo&Stitch: accurate reconciliation of genome assemblies via optical maps. - Weihua Pan; Steve Wanamaker; Audrey M. V. Ah-Fong; Howard S. Judelson; Stefano Lonardi (Bioinform., 2018)