ProbeDesigner: for the design of probesets for branched DNA (bDNA) signal amplification assays. - Steven Bushnell; J. Budde; T. Catino; Jack Cole; A. Derti; R. Kelso; M. L. Collins; G. Molino; P. Sheridan; J. Monahan; M. Urdea (Bioinform., 1999)

Bayesian Estimation of Fold-Changes in the Analysis of Gene Expression: The PFOLD Algorithm. - Joachim Theilhaber; Steven Bushnell; Amanda Jackson; Rainer Fuchs (J. Comput. Biol., 2001)

GECKO: a complete large-scale gene expression analysis platform. - Joachim Theilhaber; Anatoly Ulyanov; Anish Malanthara; Jack Cole; Dapeng Xu; Robert Nahf; Michael Heuer; Christoph Brockel; Steven Bushnell (BMC Bioinform., 2004)