JCoDA: a tool for detecting evolutionary selection. - Steven N. Steinway; Ruth Dannenfelser; Christopher D. Laucius; James E. Hayes; Sudhir Nayak (BMC Bioinform., 2010)

Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome. - Steven N. Steinway; Matthew B. Biggs; Thomas P. Loughran Jr.; Jason A. Papin; Réka Albert (PLoS Comput. Biol., 2015)