MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing. - Hardik I. Parikh; Vishal N. Koparde; Steven P. Bradley; Gregory A. Buck; Nihar U. Sheth (BMC Bioinform., 2016)

MEEPTOOLS: a maximum expected error based FASTQ read filtering and trimming toolkit. - Vishal N. Koparde; Hardik I. Parikh; Steven P. Bradley; Nihar U. Sheth (Int. J. Comput. Biol. Drug Des., 2017)