Stochastic Models of Biological Processes. - Steven S. Andrews; Tuan Dinh; Adam P. Arkin (Encyclopedia of Complexity and Systems Science, 2009)

Detailed Simulations of Cell Biology with Smoldyn 2.1. - Steven S. Andrews; Nathan J. Addy; Roger Brent; Adam P. Arkin (PLoS Comput. Biol., 2010)

Multiscale reaction-diffusion simulations with Smoldyn. - Martin Robinson; Steven S. Andrews; Radek Erban (Bioinform., 2015)

Smoldyn: particle-based simulation with rule-based modeling, improved molecular interaction and a library interface. - Steven S. Andrews (Bioinform., 2017)

Python interfaces for the Smoldyn simulator. - Dilawar Singh; Steven S. Andrews (Bioinform., 2021)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (CoRR, 2022)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (Nucleic Acids Res., 2022)

Modeling Diffusion Between Regions With Different Diffusion Coefficients. - Steven S. Andrews (IEEE Trans. Mol. Biol. Multi Scale Commun., 2024)