Efficient algorithm for 2-D arithmetic Fourier transform. - Xijin Ge; Nan-Xian Chen; Zhao-Dou Chen (IEEE Trans. Signal Process., 1997)

Learning the parts of objects by auto-association. - Xijin Ge; Shuichi Iwata (Neural Networks, 2002)

A large quantity of novel human antisense transcripts detected by LongSAGE. - Xijin Ge; Qingfa Wu; Yong-Chul Jung; Jun Chen; San Ming Wang (Bioinform., 2006)

Large-scale analysis of expression signatures reveals hidden links among diverse cellular processes. - Steven X. Ge (BMC Syst. Biol., 2011)

AraPath: a knowledgebase for pathway analysis in Arabidopsis. - Liming Lai; Arthur Liberzon; Jason Hennessey; Gaixin Jiang; Jianli Qi; Jill P. Mesirov; Steven X. Ge (Bioinform., 2012)

A cross disciplinary study of link decay and the effectiveness of mitigation techniques. - Jason Hennessey; Steven X. Ge (BMC Bioinform., 2013)

iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data. - Steven X. Ge; Eun Wo Son; Runan Yao (BMC Bioinform., 2018)

DataViz: visualization of high-dimensional data in virtual reality. - Eric Feng; Xijin Ge (F1000Research, 2018)

ShinyGO: a graphical gene-set enrichment tool for animals and plants. - Steven X. Ge; Dongmin Jung; Runan Yao (Bioinform., 2020)

DataMap: A Portable Application for Visualizing High-Dimensional Data. - Xijin Ge (CoRR, 2025)