New Insights into the Genetic Control of Gene Expression using a Bayesian Multi-tissue Approach. - Enrico Petretto; Leonardo Bottolo; Sarah R. Langley; Matthias Heinig; Chris McDermott-Roe; Rizwan Sarwar; Michal Pravenec; Norbert Hübner; Timothy J. Aitman; Stuart A. Cook; Sylvia Richardson (PLoS Comput. Biol., 2010)

NECTAR: a database of codon-centric missense variant annotations. - Sungsam Gong; James S. Ware; Roddy Walsh; Stuart A. Cook (Nucleic Acids Res., 2014)

Prediction of Clinical Information from Cardiac MRI Using Manifold Learning. - Haiyan Wang 018; Wenzhe Shi; Wenjia Bai; Antonio M. Simoes Monteiro de Marvao; Timothy J. W. Dawes; Declan P. O'Regan; Philip J. Edwards; Stuart A. Cook; Daniel Rueckert (FIMH, 2015)

Beyond the AHA 17-Segment Model: Motion-Driven Parcellation of the Left Ventricle. - Wenjia Bai; Devis Peressutti; Sarah Parisot; Ozan Oktay; Martin Rajchl; Declan P. O'Regan; Stuart A. Cook; Andrew P. King; Daniel Rueckert (STACOM@MICCAI, 2015)

A bi-ventricular cardiac atlas built from 1000+ high resolution MR images of healthy subjects and an analysis of shape and motion. - Wenjia Bai; Wenzhe Shi; Antonio M. Simoes Monteiro de Marvao; Timothy J. W. Dawes; Declan P. O'Regan; Stuart A. Cook; Daniel Rueckert (Medical Image Anal., 2015)

Respiratory Motion Correction for 2D Cine Cardiac MR Images using Probabilistic Edge Maps. - Ozan Oktay; Giacomo Tarroni; Wenjia Bai; Antonio de Marvao; Declan P. O'Regan; Stuart A. Cook; Daniel Rueckert (CinC, 2016)

Multi-input Cardiac Image Super-Resolution Using Convolutional Neural Networks. - Ozan Oktay; Wenjia Bai; Matthew C. H. Lee; Ricardo Guerrero; Konstantinos Kamnitsas; Jose Caballero; Antonio de Marvao; Stuart A. Cook; Declan P. O'Regan; Daniel Rueckert (MICCAI (3), 2016)

Learning-Based Heart Coverage Estimation for Short-Axis Cine Cardiac MR Images. - Giacomo Tarroni; Ozan Oktay; Wenjia Bai; Andreas Schuh; Hideaki Suzuki; Jonathan Passerat-Palmbach; Ben Glocker; Antonio de Marvao; Declan P. O'Regan; Stuart A. Cook; Daniel Rueckert (FIMH, 2017)

Anatomically Constrained Neural Networks (ACNN): Application to Cardiac Image Enhancement and Segmentation. - Ozan Oktay; Enzo Ferrante; Konstantinos Kamnitsas; Mattias P. Heinrich; Wenjia Bai; Jose Caballero; Ricardo Guerrero; Stuart A. Cook; Antonio de Marvao; Timothy Dawes; Declan P. O'Regan; Bernhard Kainz; et al. (CoRR, 2017)

Stratified Decision Forests for Accurate Anatomical Landmark Localization in Cardiac Images. - Ozan Oktay; Wenjia Bai; Ricardo Guerrero; Martin Rajchl; Antonio de Marvao; Declan P. O'Regan; Stuart A. Cook; Mattias P. Heinrich; Ben Glocker; Daniel Rueckert (IEEE Trans. Medical Imaging, 2017)

Learning Interpretable Anatomical Features Through Deep Generative Models: Application to Cardiac Remodeling. - Carlo Biffi; Ozan Oktay; Giacomo Tarroni; Wenjia Bai; Antonio M. Simoes Monteiro de Marvao; Georgia Doumou; Martin Rajchl; Reem Bedair; Sanjay K. Prasad; Stuart A. Cook; Declan P. O'Regan; Daniel Rueckert (MICCAI (2), 2018)

A Comprehensive Approach for Learning-Based Fully-Automated Inter-slice Motion Correction for Short-Axis Cine Cardiac MR Image Stacks. - Giacomo Tarroni; Ozan Oktay; Matthew Sinclair; Wenjia Bai; Andreas Schuh; Hideaki Suzuki; Antonio de Marvao; Declan P. O'Regan; Stuart A. Cook; Daniel Rueckert (MICCAI (1), 2018)

Three-dimensional cardiovascular imaging-genetics: a mass univariate framework. - Carlo Biffi; Antonio de Marvao; Mark I Attard; Timothy J. W. Dawes; Nicola Whiffin; Wenjia Bai; Wenzhe Shi; Catherine Francis; Hannah Meyer; Rachel J. Buchan; Stuart A. Cook; Daniel Rueckert; et al. (Bioinform., 2018)

Anatomically Constrained Neural Networks (ACNNs): Application to Cardiac Image Enhancement and Segmentation. - Ozan Oktay; Enzo Ferrante; Konstantinos Kamnitsas; Mattias P. Heinrich; Wenjia Bai; Jose Caballero; Stuart A. Cook; Antonio de Marvao; Timothy Dawes; Declan P. O'Regan; Bernhard Kainz; Ben Glocker; et al. (IEEE Trans. Medical Imaging, 2018)

3D High-Resolution Cardiac Segmentation Reconstruction From 2D Views Using Conditional Variational Autoencoders. - Carlo Biffi; Juan J. Cerrolaza; Giacomo Tarroni; Antonio de Marvao; Stuart A. Cook; Declan P. O'Regan; Daniel Rueckert (ISBI, 2019)

Explainable Shape Analysis through Deep Hierarchical Generative Models: Application to Cardiac Remodeling. - Carlo Biffi; Juan J. Cerrolaza; Giacomo Tarroni; Wenjia Bai; Ozan Oktay; Loïc Le Folgoc; Konstantinos Kamnitsas; Antonio de Marvao; Georgia Doumou; Jinming Duan 001; Sanjay K. Prasad; Stuart A. Cook; et al. (CoRR, 2019)

Deep-learning cardiac motion analysis for human survival prediction. - Ghalib A. Bello; Timothy J. W. Dawes; Jinming Duan 001; Carlo Biffi; Antonio de Marvao; Luke S. G. E. Howard; J. Simon R. Gibbs; Martin R. Wilkins; Stuart A. Cook; Daniel Rueckert; Declan P. O'Regan (Nat. Mach. Intell., 2019)

Learning-Based Quality Control for Cardiac MR Images. - Giacomo Tarroni; Ozan Oktay; Wenjia Bai; Andreas Schuh; Hideaki Suzuki; Jonathan Passerat-Palmbach; Antonio de Marvao; Declan P. O'Regan; Stuart A. Cook; Ben Glocker; Paul M. Matthews; Daniel Rueckert (IEEE Trans. Medical Imaging, 2019)

Whole-genome sequencing of patients with rare diseases in a national health system. - Ernest Turro; William J. Astle; Karyn Megy; Stefan Gräf; Daniel Greene; Olga Shamardina; Hana Lango Allen; Alba Sanchis-Juan; Mattia Frontini; Chantal Thys; Jonathan Stephens; Rutendo Mapeta; et al. (Nat., 2020)

Explainable Anatomical Shape Analysis Through Deep Hierarchical Generative Models. - Carlo Biffi; Juan J. Cerrolaza; Giacomo Tarroni; Wenjia Bai; Antonio de Marvao; Ozan Oktay; Christian Ledig; Loïc Le Folgoc; Konstantinos Kamnitsas; Georgia Doumou; Jinming Duan 001; Sanjay K. Prasad; et al. (IEEE Trans. Medical Imaging, 2020)

Joint Motion Correction and Super Resolution for Cardiac Segmentation via Latent Optimisation. - Shuo Wang 011; Chen Qin; Nicoló Savioli; Chen Chen 042; Declan P. O'Regan; Stuart A. Cook; Yike Guo; Daniel Rueckert; Wenjia Bai (MICCAI (3), 2021)

Joint Semi-supervised 3D Super-Resolution and Segmentation with Mixed Adversarial Gaussian Domain Adaptation. - Nicoló Savioli; Antonio de Marvao; Wenjia Bai; Shuo Wang 011; Stuart A. Cook; Calvin W. L. Chin; Daniel Rueckert; Declan P. O'Regan (CoRR, 2021)