WikiSim: simulating knowledge collection and curation in structured wikis. - Luna De Ferrari; Stuart Aitken; Jano I. van Hemert; Igor Goryanin (Int. Sym. Wikis, 2008)

OBO & OWL: Roundtrip Ontology Transformations. - Syed Hamid Tirmizi; Stuart Aitken; Dilvan A. Moreira; Chris Mungall; Juan F. Sequeda; Nigam H. Shah; Daniel P. Miranker (SWAT4LS, 2009)

Mapping between the OBO and OWL ontology languages. - Syed Hamid Tirmizi; Stuart Aitken; Dilvan A. Moreira; Chris Mungall; Juan F. Sequeda; Nigam H. Shah; Daniel P. Miranker (J. Biomed. Semant., 2011)

Modelling Reveals Kinetic Advantages of Co-Transcriptional Splicing. - Stuart Aitken; Ross D. Alexander; Jean D. Beggs (PLoS Comput. Biol., 2011)

EnzML: multi-label prediction of enzyme classes using InterPro signatures. - Luna De Ferrari; Stuart Aitken; Jano I. van Hemert; Igor Goryanin (BMC Bioinform., 2012)

MCOIN: a novel heuristic for determining transcription factor binding site motif width. - Alastair M. Kilpatrick; Bruce Ward; Stuart Aitken (Algorithms Mol. Biol., 2013)

Nested sampling for parameter inference in systems biology: application to an exemplar circadian model. - Stuart Aitken; Ozgur E. Akman (BMC Syst. Biol., 2013)

Stochastic EM-based TFBS motif discovery with MITSU. - Alastair M. Kilpatrick; Bruce Ward; Stuart Aitken (Bioinform., 2014)

Dizzy-Beats: a Bayesian evidence analysis tool for systems biology. - Stuart Aitken; Alastair M. Kilpatrick; Ozgur E. Akman (Bioinform., 2015)

Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response. - Stuart Aitken; Shigeyuki Magi; Ahmad M. N. Alhendi; Masayoshi Itoh; Hideya Kawaji; Timo Lassmann; Carsten O. Daub; Erik Arner; Piero Carninci; Alistair R. R. Forrest; Yoshihide Hayashizaki; Levon M. Khachigian; et al. (PLoS Comput. Biol., 2015)

The past, present and future of the video game cinematic: a look at the evolution of the video game cinematic and its impact on the industry. - Franck Balson; Stuart Aitken; Phillip Hillenbrand; Thomas Vu; Matthew Ward; Jakub Jablonski; Alex Sándor Rabb (SIGGRAPH Panels, 2018)