Prediction of protein function by combining phylogenetic tree and mathematical inference. - Su-Ping Deng; Jian Lu 001; Wei Fu; Ping Yu 004 (BMEI, 2014)

Diagnosing schizophrenia by integrating genomic and imaging data through network fusion. - Su-Ping Deng; Dongdong Lin; Vince D. Calhoun; Yu-Ping Wang 002 (BIBM, 2016)

Schizophrenia genes discovery by mining the minimum spanning trees from multi-dimensional imaging genomic data integration. - Su-Ping Deng; Dongdong Lin; Vince D. Calhoun; Yu-Ping Wang 002 (BIBM, 2016)

Predicting schizophrenia by fusing networks from SNPs, DNA methylation and fMRI data. - Su-Ping Deng; Dongdong Lin; Vince D. Calhoun; Yu-Ping Wang 002 (EMBC, 2016)

Identifying Stages of Kidney Renal Cell Carcinoma by Combining Gene Expression and DNA Methylation Data. - Su-Ping Deng; Shaolong Cao; De-Shuang Huang; Yu-Ping Wang 002 (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

RBPMetaDB: a comprehensive annotation of mouse RNA-Seq datasets with perturbations of RNA-binding proteins. - Jin Li; Su-Ping Deng; Jacob Vieira; James Thomas 006; Valerio Costa; Ching-San Tseng; Franjo Ivankovic; Alfredo Ciccodicola; Peng Yu (Database J. Biol. Databases Curation, 2018)

CITGeneDB: a comprehensive database of human and mouse genes enhancing or suppressing cold-induced thermogenesis validated by perturbation experiments in mice. - Jin Li; Su-Ping Deng; Gang Wei; Peng Yu (Database J. Biol. Databases Curation, 2018)

Integrating Imaging Genomic Data in the Quest for Biomarkers of Schizophrenia Disease. - Su-Ping Deng; Wenxing Hu; Vince D. Calhoun; Yu-Ping Wang 002 (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Identifying Key Genes of Liver Cancer by Networking of Multiple Data Sets. - Su-Ping Deng; Wei-Li Guo (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Capsule Network for Predicting RNA-Protein Binding Preferences Using Hybrid Feature. - Zhen Shen; Su-Ping Deng; De-Shuang Huang (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

RNA-Protein Binding Sites Prediction via Multi Scale Convolutional Gated Recurrent Unit Networks. - Zhen Shen; Su-Ping Deng; De-Shuang Huang (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)