DeepMoD: Deep learning for model discovery in noisy data. - Gert-Jan Both; Subham Choudhury; Pierre Sens 002; Remy Kusters (J. Comput. Phys., 2021)

Reconstructing Kinetic Models for Dynamical Studies of Metabolism using Generative Adversarial Networks. - Subham Choudhury; Michael Moret; Pierre Salvy; Daniel Weilandt; Vassily Hatzimanikatis; Ljubisa Miskovic (Nat. Mach. Intell., 2022)

Impact of phylogeny on the inference of functional sectors from protein sequence data. - Nicola Dietler; Alia Abbara; Subham Choudhury; Anne-Florence Bitbol (PLoS Comput. Biol., 2024)