Efficient and Scalable Workflows for Genomic Analyses. - Subho S. Banerjee; Arjun P. Athreya; Liudmila S. Mainzer; C. Victor Jongeneel; Wen-mei W. Hwu; Zbigniew T. Kalbarczyk; Ravishankar K. Iyer (DIDC@HPDC, 2016)

Data-driven longitudinal modeling and prediction of symptom dynamics in major depressive disorder: Integrating factor graphs and learning methods. - Arjun P. Athreya; Subho S. Banerjee; Drew Neavin; Rima Kaddurah-Daouk; A. John Rush; Mark A. Frye; Liewei Wang; Richard M. Weinshilboum; William V. Bobo; Ravishankar K. Iyer (CIBCB, 2017)

ASAP: Accelerated Short Read Alignment on Programmable Hardware (Abstract Only). - Subho S. Banerjee; Mohamed El-Hadedy 001; Jong Bin Lim; Daniel Chen 001; Zbigniew T. Kalbarczyk; Deming Chen; Ravishankar K. Iyer (FPGA, 2017)

On accelerating pair-HMM computations in programmable hardware. - Subho S. Banerjee; Mohamed El-Hadedy 001; Ching Y. Tan; Zbigniew T. Kalbarczyk; Steven S. Lumetta; Ravishankar K. Iyer (FPL, 2017)

A ML-based Runtime System for Executing Dataflow Graphs on Heterogeneous Processors. - Subho S. Banerjee; Arjun P. Athreya; Zbigniew Kalbarczyk; Steven Lumetta; Ravishankar K. Iyer (SoCC, 2018)

Hands Off the Wheel in Autonomous Vehicles?: A Systems Perspective on over a Million Miles of Field Data. - Subho S. Banerjee; Saurabh Jha; James Cyriac; Zbigniew T. Kalbarczyk; Ravishankar K. Iyer (DSN, 2018)

AVFI: Fault Injection for Autonomous Vehicles. - Saurabh Jha; Subho S. Banerjee; James Cyriac; Zbigniew T. Kalbarczyk; Ravishankar K. Iyer (DSN Workshops, 2018)

AcMC 2 : Accelerating Markov Chain Monte Carlo Algorithms for Probabilistic Models. - Subho S. Banerjee; Zbigniew T. Kalbarczyk; Ravishankar K. Iyer (ASPLOS, 2019)

Towards a Bayesian Approach for Assessing Fault Tolerance of Deep Neural Networks. - Subho S. Banerjee; James Cyriac; Saurabh Jha; Zbigniew T. Kalbarczyk; Ravishankar K. Iyer (DSN (Supplements), 2019)

ML-Based Fault Injection for Autonomous Vehicles: A Case for Bayesian Fault Injection. - Saurabh Jha; Subho S. Banerjee; Timothy Tsai 002; Siva Kumar Sastry Hari; Michael B. Sullivan 001; Zbigniew T. Kalbarczyk; Stephen W. Keckler; Ravishankar K. Iyer (DSN, 2019)

CAUDIT: Continuous Auditing of SSH Servers To Mitigate Brute-Force Attacks. - Phuong Cao; Yuming Wu; Subho S. Banerjee; Justin Azoff; Alexander Withers; Zbigniew T. Kalbarczyk; Ravishankar K. Iyer (NSDI, 2019)

Inductive Bias-driven Reinforcement Learning For Efficient Schedules in Heterogeneous Clusters. - Subho S. Banerjee; Saurabh Jha; Ravishankar K. Iyer (CoRR, 2019)

ASAP: Accelerated Short-Read Alignment on Programmable Hardware. - Subho S. Banerjee; Mohamed El-Hadedy 001; Jong Bin Lim; Zbigniew T. Kalbarczyk; Deming Chen; Steven S. Lumetta; Ravishankar K. Iyer (IEEE Trans. Computers, 2019)

Machine learning for load balancing in the Linux kernel. - Jingde Chen; Subho S. Banerjee; Zbigniew T. Kalbarczyk; Ravishankar K. Iyer (APSys, 2020)

ML-Driven Malware that Targets AV Safety. - Saurabh Jha; Shengkun Cui; Subho S. Banerjee; James Cyriac; Timothy Tsai 002; Zbigniew Kalbarczyk; Ravishankar K. Iyer (DSN, 2020)

Inductive-bias-driven Reinforcement Learning For Efficient Schedules in Heterogeneous Clusters. - Subho S. Banerjee; Saurabh Jha; Zbigniew Kalbarczyk; Ravishankar K. Iyer (ICML, 2020)

FIRM: An Intelligent Fine-grained Resource Management Framework for SLO-Oriented Microservices. - Haoran Qiu; Subho S. Banerjee; Saurabh Jha; Zbigniew T. Kalbarczyk; Ravishankar K. Iyer (OSDI, 2020)

Live forensics for HPC systems: a case study on distributed storage systems. - Saurabh Jha; Shengkun Cui; Subho S. Banerjee; Tianyin Xu; Jeremy Enos; Mike Showerman; Zbigniew T. Kalbarczyk; Ravishankar K. Iyer (SC, 2020)

ML-driven Malware that Targets AV Safety. - Saurabh Jha; Shengkun Cui; Subho S. Banerjee; Timothy Tsai 002; Zbigniew Kalbarczyk; Ravishankar K. Iyer (CoRR, 2020)

BayesPerf: minimizing performance monitoring errors using Bayesian statistics. - Subho S. Banerjee; Saurabh Jha; Zbigniew Kalbarczyk; Ravishankar K. Iyer (ASPLOS, 2021)

Improved GPU Implementations of the Pair-HMM Forward Algorithm for DNA Sequence Alignment. - Enliang Li; Subho S. Banerjee; Sitao Huang; Ravishankar K. Iyer; Deming Chen (ICCD, 2021)

Is Function-as-a-Service a Good Fit for Latency-Critical Services? - Haoran Qiu; Saurabh Jha; Subho S. Banerjee; Archit Patke; Chen Wang 039; Hubertus Franke; Zbigniew T. Kalbarczyk; Ravishankar K. Iyer (WOSC@Middleware, 2021)