A hybrid factored frontier algorithm for dynamic Bayesian network models of biopathways. - Sucheendra K. Palaniappan; S. Akshay 001; Blaise Genest; P. S. Thiagarajan (CMSB, 2011)

Dynamic Bayesian Networks: A Factored Model of Probabilistic Dynamics. - Sucheendra K. Palaniappan; P. S. Thiagarajan (ATVA, 2012)

Approximate probabilistic analysis of biopathway dynamics. - Bing Liu 013; Andrei Hagiescu; Sucheendra K. Palaniappan; Bipasa Chattopadhyay; Zheng Cui; Weng-Fai Wong; P. S. Thiagarajan (Bioinform., 2012)

Improved statistical model checking methods for pathway analysis. - Chuan Hock Koh; Sucheendra K. Palaniappan; P. S. Thiagarajan; Limsoon Wong (BMC Bioinform., 2012)

A Hybrid Factored Frontier Algorithm for Dynamic Bayesian Networks with a Biopathways Application. - Sucheendra K. Palaniappan; S. Akshay 001; Bing Liu 013; Blaise Genest; P. S. Thiagarajan (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Statistical Model Checking Based Calibration and Analysis of Bio-pathway Models. - Sucheendra K. Palaniappan; Benjamin M. Gyori; Bing Liu 013; David Hsu; P. S. Thiagarajan (CMSB, 2013)

GPU code generation for ODE-based applications with phased shared-data access patterns. - Andrei Hagiescu; Bing Liu 013; R. Ramanathan 002; Sucheendra K. Palaniappan; Zheng Cui; Bipasa Chattopadhyay; P. S. Thiagarajan; Weng-Fai Wong (ACM Trans. Archit. Code Optim., 2013)

Probabilistic verification of partially observable dynamical systems. - Benjamin M. Gyori; Daniel Paulin; Sucheendra K. Palaniappan (CoRR, 2014)

Extracting Biological Pathway Models From NLP Event Representations. - Michael Spranger; Sucheendra K. Palaniappan; Samik Ghosh (BioNLP@IJCNLP, 2015)

Measuring the State of the Art of Automated Pathway Curation Using Graph Algorithms - A Case Study of the mTOR Pathway. - Michael Spranger; Sucheendra K. Palaniappan; Samik Ghosh (BioNLP@ACL, 2016)

A Look-Ahead Simulation Algorithm for DBN Models of Biochemical Pathways. - Sucheendra K. Palaniappan; Matthieu Pichené; Grégory Batt; Eric Fabre; Blaise Genest (HSB, 2016)

Toward Community Standards and Software for Whole-Cell Modeling. - Dagmar Waltemath; Jonathan R. Karr; Frank T. Bergmann; Vijayalakshmi Chelliah; Michael Hucka; Marcus Krantz; Wolfram Liebermeister; Pedro Mendes 001; Chris J. Myers; Pinar Pir; Begum Alaybeyoglu; Naveen K. Aranganathan; et al. (IEEE Trans. Biomed. Eng., 2016)

Abstracting the dynamics of biological pathways using information theory: a case study of apoptosis pathway. - Sucheendra K. Palaniappan; François Bertaux; Matthieu Pichené; Eric Fabre; Grégory Batt; Blaise Genest (Bioinform., 2017)

Computational Systems Biology. - Sucheendra K. Palaniappan; Ayako Yachie-Kinoshita; Samik Ghosh (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)

Computational Systems Biology Applications. - Ayako Yachie-Kinoshita; Sucheendra K. Palaniappan; Samik Ghosh (Encyclopedia of Bioinformatics and Computational Biology (3), 2019)

Building a reciprocal recommendation system at scale from scratch: Learnings from one of Japan's prominent dating applications. - R. Ramanathan 002; Nicolas K. Shinada; Sucheendra K. Palaniappan (RecSys, 2020)

Modeling Variability in Populations of Cells Using Approximated Multivariate Distributions. - Matthieu Pichené; Sucheendra K. Palaniappan; Eric Fabre; Blaise Genest (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

A Reciprocal Embedding Framework For Modelling Mutual Preferences. - R. Ramanathan 002; Nicolas K. Shinada; Michinobu Shimatani; Yuhei Yamaguchi; Junichi Tanaka; Yuta Iizuka; Sucheendra K. Palaniappan (AAAI, 2021)

T-PAIR: Temporal Node-Pair Embedding for Automatic Biomedical Hypothesis Generation. - Uchenna Akujuobi; Michael Spranger; Sucheendra K. Palaniappan; Xiangliang Zhang 001 (IEEE Trans. Knowl. Data Eng., 2022)

T-PAIR: Temporal Node pair Embedding for Automatic Biomedical Hypothesis Generation (Extended abstract). - Uchenna Akujuobi; Michael Spranger; Sucheendra K. Palaniappan; Xiangliang Zhang 001 (ICDE, 2023)

Leveraging pre-trained language models for mining microbiome-disease relationships. - Nikitha Karkera; Sathwik Acharya; Sucheendra K. Palaniappan (BMC Bioinform., 2023)

Link prediction for hypothesis generation: an active curriculum learning infused temporal graph-based approach. - Uchenna Akujuobi; Priyadarshini Kumari; Jihun Choi; Samy Badreddine; Kana Maruyama; Sucheendra K. Palaniappan; Tarek R. Besold (Artif. Intell. Rev., 2024)