Adaptive DNASegmentation: An Algorithm for Finding CpG Islands. - Sudeshna Adak (German Conference on Bioinformatics, 2000)

A system for knowledge management in bioinformatics. - Sudeshna Adak; Vishal S. Batra; Deo N. Bhardwaj; Pasumarti V. Kamesam; Pankaj Kankar; Manish P. Kurhekar; Biplav Srivastava (CIKM, 2002)

Genome-Wide Pathway Analysis and Visualization Using Gene Expression Data. - Manish P. Kurhekar; Sudeshna Adak; Suchit Jhunjhunwala; K. Raghupathy (Pacific Symposium on Biocomputing, 2002)

MedMeSH Summarizer: Text Mining for Gene Clusters. - Pankaj Kankar; Sudeshna Adak; A. Sarkar; K. Murali; Gaurav Sharma 002 (SDM, 2002)

Considerations in Making Microarray Cross-Platform Correlations. - Manohar Kollegal; Sudeshna Adak; Richard Shippy; Timothy Sendera (CSB Workshops, 2005)

Predicting Continuous Epitopes in Proteins. - Reeti Tandon; Sudeshna Adak; Brion Sarachan; William FitzHugh; Jeremy Heil; Vaibhav A. Narayan (CSB Workshops, 2005)

Neural networks for longitudinal studies in Alzheimer's disease. - Reeti Tandon; Sudeshna Adak; Jeffrey A. Kaye (Artif. Intell. Medicine, 2006)

Highly multiplexed single-cell analysis of formalin-fixed, paraffin-embedded cancer tissue. - Michael J. Gerdes; Christopher J. Sevinsky; Anup Sood; Sudeshna Adak; Musodiq O. Bello; Alexander Bordwell; Ali Can; Alex Corwin; Sean Dinn; Robert Filkins; Denise Hollman; Vidya Kamath; et al. (Proc. Natl. Acad. Sci. USA, 2013)