Exact algorithms for planted motif challenge problems. - Sanguthevar Rajasekaran; Sudha Balla; Chun-Hsi Huang (APBC, 2005)

Exact algorithms for motif search. - Sanguthevar Rajasekaran; Sudha Balla; Chun-Hsi Huang; Vishal Thapar; Michael R. Gryk; Mark W. Maciejewski; Martin R. Schiller (APBC, 2005)

Exact Algorithms for Planted Motif Problems. - Sanguthevar Rajasekaran; Sudha Balla; Chun-Hsi Huang (J. Comput. Biol., 2005)

Space and Time Efficient Algorithms for Planted Motif Search. - Jaime I. Dávila; Sudha Balla; Sanguthevar Rajasekaran (International Conference on Computational Science (2), 2006)

Space and Time Efficient Algorithms to Discover Endogenous RNAi Patterns in Complete Genome Data. - Sudha Balla; Sanguthevar Rajasekaran (ISBRA, 2007)

Fast Algorithms for Selecting Specific siRNA in Complete mRNA Data. - Jaime I. Dávila; Sudha Balla; Sanguthevar Rajasekaran (WABI, 2007)

Efficient Algorithms for degenerate Primer Search. - Sudha Balla; Sanguthevar Rajasekaran; Ion I. Mandoiu (Int. J. Found. Comput. Sci., 2007)

Fast and Practical Algorithms for Planted (l, d) Motif Search. - Jaime I. Dávila; Sudha Balla; Sanguthevar Rajasekaran (IEEE ACM Trans. Comput. Biol. Bioinform., 2007)

Approximation Algorithms for the Primer Selection, Planted Motif Search, and Related Problems. - Sudha Balla; Jaime I. Dávila; Sanguthevar Rajasekaran (Handbook of Approximation Algorithms and Metaheuristics, 2007)

Faster greedy algorithms for Multiple Degenerate Primer Selection. - Sudha Balla; Sanguthevar Rajasekaran; Ion I. Mandoiu (BIBE, 2008)

Degenerate primer selection algorithms. - Dolly Sharma 001; Sudha Balla; Sanguthevar Rajasekaran; Nikoletta DiGirolamo (CIBCB, 2009)

Minimotif miner 2nd release: a database and web system for motif search. - Sanguthevar Rajasekaran; Sudha Balla; Patrick Gradie; Michael R. Gryk; Krishna Kadaveru; Vamsi Kundeti; Mark W. Maciejewski; Tian Mi; Nicholas Rubino; Jay Vyas; Martin R. Schiller (Nucleic Acids Res., 2009)

Approximation Algorithms for the Primer Selection, PlantedMotif Search, and Related Problems. - Sudha Balla; Jaime I. Dávila; Marius Nicolae; Sanguthevar Rajasekaran (Handbook of Approximation Algorithms and Metaheuristics (2), 2018)