BcePred: Prediction of Continuous B-Cell Epitopes in Antigenic Sequences Using Physico-chemical Properties. - Sudipto Saha; G. P. S. Raghava (ICARIS, 2004)

VICMpred: An SVM-based Method for the Prediction of Functional Proteins of Gram-negative Bacteria Using Amino Acid Patterns and Composition. - Sudipto Saha; G. P. S. Raghava (Genom. Proteom. Bioinform., 2006)

VGIchan: Prediction and Classification of Voltage-Gated Ion Channels. - Sudipto Saha; Jyoti Zack; Balvinder Singh; G. P. S. Raghava (Genom. Proteom. Bioinform., 2006)

AlgPred: prediction of allergenic proteins and mapping of IgE epitopes. - Sudipto Saha; G. P. S. Raghava (Nucleic Acids Res., 2006)

Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary information and motifs. - Mamoon Rashid 003; Sudipto Saha; Gajendra P. S. Raghava (BMC Bioinform., 2007)

Prediction of Neurotoxins Based on Their Function and Source. - Sudipto Saha; Gajendra P. S. Raghava (Silico Biol., 2007)

BTXpred: Prediction of Bacterial Toxins. - Sudipto Saha; Gajendra P. S. Raghava (Silico Biol., 2007)

Systematic discovery of condition specific Wnt signaling subnetworks. - Sudipto Saha; Rob M. Ewing (BIBM Workshops, 2011)

ROCS: A reproducibility index and confidence score for interaction proteomics. - Jean-Eudes J. Dazard; Sudipto Saha; Rob M. Ewing (BMC Bioinform., 2012)

Network-based approaches for extending the Wnt signalling pathway and identifying context-specific sub-networks. - Sudipto Saha; Theodore Roman; Alex Galante; Mehmet Koyutürk; Rob M. Ewing (Int. J. Comput. Biol. Drug Des., 2012)

LMPID: A manually curated database of linear motifs mediating protein-protein interactions. - Debasree Sarkar; Tanmoy Jana; Sudipto Saha (Database J. Biol. Databases Curation, 2015)

Metagenomic Surveys of Gut Microbiota. - Rahul Shubhra Mandal; Sudipto Saha; Santasabuj Das (Genom. Proteom. Bioinform., 2015)

MYCbase: a database of functional sites and biochemical properties of Myc in both normal and cancer cells. - Debangana Chakravorty; Tanmoy Jana; Sukhen Das Mandal; Anuradha Seth; Anubrata Bhattacharya; Sudipto Saha (BMC Bioinform., 2017)

An analytics dashboard visualization for flood decision support system. - Sudipto Saha; Shashank Shekhar; Sounak Sadhukhan; Prasun Das (J. Vis., 2018)

In silico modeling of phosphorylation dependent and independent c-Myc degradation. - Debangana Chakravorty; Krishnendu Banerjee; Tarunendu Mapder; Sudipto Saha (BMC Bioinform., 2019)

Computational approach to target USP28 for regulating Myc. - Debangana Chakravorty; Abhirupa Ghosh; Sudipto Saha (Comput. Biol. Chem., 2020)

BCSCdb: a database of biomarkers of cancer stem cells. - Shazia Firdous; Abhirupa Ghosh; Sudipto Saha (Database J. Biol. Databases Curation, 2022)

LHSPred: A web based application for predicting lung health severity. - Sudipto Bhattacharjee; Banani Saha; Parthasarathi Bhattacharyya; Sudipto Saha (Biomed. Signal Process. Control., 2022)

Classification of obstructive and non-obstructive pulmonary diseases on the basis of spirometry using machine learning techniques. - Sudipto Bhattacharjee; Banani Saha; Parthasarathi Bhattacharyya; Sudipto Saha (J. Comput. Sci., 2022)

Symptom-based drug prediction of lifestyle-related chronic diseases using unsupervised machine learning techniques. - Sudipto Bhattacharjee; Banani Saha; Sudipto Saha (Comput. Biol. Medicine, 2024)