FFTs and three-dimensional Poisson solvers for hypercubes. - Roland A. Sweet; William L. Briggs; Suely Oliveira; Jules L. Porsche; Thomas Turnbull (Parallel Comput., 1991)

A Parallel Version of a Multigrid Algorithm for Isotropic Transport Equations. - Tom Manteuffel; Steve F. McCormick; Jim Morel; Suely Oliveira; G. Yang (SIAM J. Sci. Comput., 1994)

A Fast Multigrid Algorithm for Isotropic Transport Problems I: Pure Scattering. - Thomas A. Manteuffel; Stephen F. McCormick; Jim Morel; Suely Oliveira; G. Yang (SIAM J. Sci. Comput., 1995)

Parallel Multigrid Methods for Transport Equations: The Anisotropic Case. - Suely Oliveira (Parallel Comput., 1996)

New Partitioning Schemes for Parallel Modified Gram-Schmidt Orthogonalization. - Suely Oliveira; Takako Soma (ISPAN, 1997)

An Efficient Parallel Implementation of a New Chasing Algorithm. - Z. Chen; Yuanhua Deng; Suely Oliveira (PP, 1997)

A Parallel Solver for Extreme Eigenpairs. - Leonardo Borges; Suely Oliveira (Euro-Par, 1998)

A new parallel chasing algorithm for transforming arrowhead matrices to tridiagonal form. - Suely Oliveira (Math. Comput., 1998)

A Graph Based Method for Generating the Fiedler Vector of Irregular Problems. - Michael Holzrichter; Suely Oliveira (IPPS/SPDP Workshops, 1999)

On the Convergence Rate of a Preconditioned Subspace Eigensolver. - Suely Oliveira (Computing, 1999)

A Graph Based Davidson Algorithm for the Graph Partitioning Problem. - Michael Holzrichter; Suely Oliveira (Int. J. Found. Comput. Sci., 1999)

A Multilevel Algorithm for Spectral Partitioning with Extended Eigen-Models. - Suely Oliveira; Takako Soma (IPDPS Workshops, 2000)

Analysis of Different Partitioning Schemes for Parallel Gram-schmidt Algorithms. - Suely Oliveira; Leonardo Borges; Michael Holzrichter; Takako Soma (Parallel Algorithms Appl., 2000)

Finding Sets Covering a Point with Application to Mesh-Free Galerkin Methods. - Xiaoxu Han; Suely Oliveira; David E. Stewart (SIAM J. Comput., 2000)

A Parallel Quadtree Algorithm for Efficient Assembly of Stiffness Matrices in Meshfree Galerkin Methods. - C. Cartwright; Suely Oliveira; David E. Stewart (IPDPS, 2001)

A New Efficient Parallel Algorithm for Computing Eigenvalues of Symmetric Tridiagonal Matrices. - Donald K. Friesen; Suely Oliveira; Jingyu Zhang (PP, 2001)

Exact Prediction of QR Fill-In by Row-Merge Trees. - Suely Oliveira (SIAM J. Sci. Comput., 2001)

A Subspace Semidefinite Programming for Spectral Graph Partitioning. - Suely Oliveira; David E. Stewart; Takako Soma (International Conference on Computational Science (1), 2002)

Semidefinite Programmingfor Graph Partitioning with Preferencesin Data Distribution. - Suely Oliveira; David E. Stewart; Takako Soma (VECPAR, 2002)

Algebraic multigrid (AMG) for saddle point systems from meshfree discretizations. - K. H. Leem; Suely Oliveira; David E. Stewart (Numer. Linear Algebra Appl., 2004)

Spectral Document Clustering Algorithms with Different Data Structures. - Suely Oliveira; Sang-Cheol Seok (CSC, 2005)

A Multi-level Approach for Document Clustering. - Suely Oliveira; Sang-Cheol Seok (International Conference on Computational Science (1), 2005)

A Multilevel Approach to Identify Functional Modules in a Yeast Protein-Protein Interaction Network. - Suely Oliveira; Sang-Cheol Seok (International Conference on Computational Science (2), 2006)

Triangular Clique Based Multilevel Approaches to Identify Protein Functional Modules. - Suely Oliveira; S. C. Seok (VECPAR, 2006)

Parallel Support Set Searches for Meshfree Methods. - C. Cartwright; Suely Oliveira; David E. Stewart (SIAM J. Sci. Comput., 2006)

Hierarchical-Matrix Preconditioners for Parabolic Optimal Control Problems. - Suely Oliveira; Fang Yang 007 (International Conference on Computational Science (1), 2007)

An algebraic approach for H-matrix preconditioners. - Suely Oliveira; Fang Yang 007 (Computing, 2007)

Multilevel approaches for large-scale proteomic networks. - Suely Oliveira; S. C. Seok (Int. J. Comput. Math., 2007)

Implementation of an H-matrix Preconditioner. - Suely Oliveira; Fang Yang 007 (CSC, 2008)

A matrix-based multilevel approach to identify functional protein modules. - Suely Oliveira; Sang-Cheol Seok (Int. J. Bioinform. Res. Appl., 2008)

ℋ-matrix preconditioners for symmetric saddle-point systems from meshfree discretization. - Sabine Le Borne; Suely Oliveira; Fang Yang 007 (Numer. Linear Algebra Appl., 2008)

A spectral clustering algorithm for manufacturing cell formation. - Suely Oliveira; J. F. Ferreira Ribeiro; S. C. Seok (Comput. Ind. Eng., 2009)

Clustering for bioinformatics via matrix optimization. - Suely Oliveira; David E. Stewart (BCB, 2011)

Analysis of nonlinear dynamics of vocal folds using high-speed video observation and biomechanical modeling. - Alan P. Pinheiro; David E. Stewart; Carlos Dias Maciel; José C. Pereira; Suely Oliveira (Digit. Signal Process., 2012)

Physically Accurate Granular flow Simulation. - Suely Oliveira; David E. Stewart (ICCS, 2012)

Building Proofs - A Practical Guide - Suely Oliveira; David E. Stewart (Building Proofs, 2015)

Identification and prediction of functional protein modules using a bi-level community detection algorithm. - Suely Oliveira; Rahil Sharma (Int. J. Bioinform. Res. Appl., 2016)

Parallel Landscape Driven Data Reduction & Spatial Interpolation Algorithm for Big LiDAR Data. - Rahil Sharma; Zewei Xu; Ramanathan Sugumaran; Suely Oliveira (ISPRS Int. J. Geo Inf., 2016)

Concurrent MMBIRFinder. - Thamer Alsulaiman; Beth Osia; Anna Malkova; Suely Oliveira (ICCABS, 2017)

Community Detection Algorithm for Big Social Networks Using Hybrid Architecture. - Rahil Sharma; Suely Oliveira (Big Data Res., 2017)

High quality multi-core multi-level algorithm for community detection. - Suely Oliveira; Rahil Sharma (Int. J. Comput. Sci. Eng., 2017)

Efficient Basis Pursuit DeNoising via Active Sets and Homotopy. - Suely Oliveira; David E. Stewart (FSDM, 2018)

Smoothed Hinge Loss and ℓ1 Support Vector Machines. - Jeffrey Hajewski; Suely Oliveira; David E. Stewart (ICDM Workshops, 2018)

Autoencoders for Educational Assessment. - Geoffrey A. Converse; Mariana Curi; Suely Oliveira (AIED (2), 2019)

Identifying Beta-Lactam Resistance with Neural Networks. - Cory Kromer-Edwards; Jace Neubaum; Suely Oliveira; Caitlin Smith; Evan Walser-Kuntz; Andrew West (BIBM, 2019)

Two Simple Tricks for Fast Cache-Aware Parallel Particle Swarm Optimization. - Jeffrey Hajewski; Suely Oliveira (CEC, 2019)

Variational Autoencoders for Baseball Player Evaluation. - Geoffrey A. Converse; Brooke Arnold; Mariana Curi; Suely Oliveira (FSDM, 2019)

Interpretable Variational Autoencoders for Cognitive Models. - Mariana Curi; Geoffrey A. Converse; Jeffrey Hajewski; Suely Oliveira (IJCNN, 2019)

Parallelizing Basis Pursuit Denoising. - Cory Kromer-Edwards; Suely Oliveira; David E. Stewart (IJCNN, 2019)

Distributed SmSVM Ensemble Learning. - Jeffrey Hajewski; Suely Oliveira (INNSBDDL, 2019)

Year, Location, and Species Information In Predicting MIC Values with Beta-Lactamase Genes. - Cory Kromer-Edwards; Mariana Castanheira; Suely Oliveira (BIBM, 2020)

A Scalable System for Neural Architecture Search. - Jeffrey Hajewski; Suely Oliveira (CCWC, 2020)

An Evolutionary Approach to Variational Autoencoders. - Jeffrey Hajewski; Suely Oliveira (CCWC, 2020)

gBeam-ACO: a greedy and faster variant of Beam-ACO. - Jeffrey Hajewski; Suely Oliveira; David E. Stewart; Laura Weiler (GECCO Companion, 2020)

Evolving deep autoencoders. - Jeffrey Hajewski; Suely Oliveira; Xiaoyu Xing (GECCO Companion, 2020)

Incorporating Item Response Theory into Knowledge Tracing. - Geoffrey A. Converse; Shi Pu 001; Suely Oliveira (AIED (2), 2021)

Efficient Evolution of Variational Autoencoders. - Jeffrey Hajewski; Suely Oliveira (CCWC, 2021)

Exploring Trade-offs in Parallel Beam-ACO. - Jeffrey Hajewski; Suely Oliveira; David E. Stewart; Laura Weiler (CCWC, 2021)

Distributed Evolution of Deep Autoencoders. - Jeffrey Hajewski; Suely Oliveira; Xiaoyu Xing (SAI (1), 2021)

Estimation of multidimensional item response theory models with correlated latent variables using variational autoencoders. - Geoffrey A. Converse; Mariana Curi; Suely Oliveira; Jonathan Templin (Mach. Learn., 2021)

K-Mer Fingerprinting with RNN to predict MICs for K. pneumoniae. - Cory Kromer-Edwards; Mariana Castanheira; Suely Oliveira (BIBM, 2022)

Compound RNN to predict MICs using K-Mer Fingerprints and Antibiotic SMILES. - Cory Kromer-Edwards; Suely Oliveira (BCB, 2023)

Using Feature Selection from XGBoost to Predict MIC Values with Neural Networks. - Cory Kromer-Edwards; Mariana Castanheira; Suely Oliveira (IJCNN, 2023)

Finding, and Countering, Future Resistance using Bacterial Antibiotic Adversarial Genetic Algorithm (BAAGA). - Cory Kromer-Edwards; Suely Oliveira (IJCNN, 2023)

A Smoothing Algorithm for l1 Support Vector Machines. - Ibrahim Emirahmetoglu; Jeffrey Hajewski; Suely Oliveira; David E. Stewart (CoRR, 2024)