Benchmarking a foundation LLM on its ability to re-label structure names in accordance with the AAPM TG-263 report. - Jason Holmes; Lian Zhang; Yuzhen Ding; Hongying Feng; Zhengliang Liu; Tianming Liu 001; William W. Wong; Sujay A. Vora; Jonathan B. Ashman; Wei Liu 146 (CoRR, 2023)

Noisy probing dose facilitated dose prediction for pencil beam scanning proton therapy: physics enhances generalizability. - Lian Zhang; Jason M. Holmes; Zhengliang Liu; Hongying Feng; Terence T. Sio; Carlos E. Vargas; Sameer R. Keole; Kristin Stützer; Sheng Li 001; Tianming Liu 001; Jiajian Shen; William W. Wong; et al. (CoRR, 2023)

Accurate Patient Alignment without Unnecessary Imaging Dose via Synthesizing Patient-specific 3D CT Images from 2D kV Images. - Yuzhen Ding; Jason M. Holmes; Hongying Feng; Baoxin Li; Lisa A. McGee; Jean-Claude M. Rwigema; Sujay A. Vora; Daniel J. Ma; Robert L. Foote; Samir H. Patel; Wei Liu 146 (CoRR, 2024)

Evaluating The Performance of Using Large Language Models to Automate Summarization of CT Simulation Orders in Radiation Oncology. - Meiyun Cao; Shaw Hu; Jason Sharp; Edward Clouser; Jason Holmes; Linda L. Lam; Xiaoning Ding; Diego Santos Toesca; Wendy S. Lindholm; Samir H. Patel; Sujay A. Vora; Peilong Wang; et al. (CoRR, 2025)

Fine-Tuning Open-Source Large Language Models to Improve Their Performance on Radiation Oncology Tasks: A Feasibility Study to Investigate Their Potential Clinical Applications in Radiation Oncology. - Peilong Wang; Zhengliang Liu; Yiwei Li 002; Jason Holmes; Peng Shu; Lian Zhang; Xiang Li 001; Quanzheng Li; Brady S. Laughlin; Diego Santos Toesca; Sujay A. Vora; Samir H. Patel; et al. (CoRR, 2025)

Diffusion Transformer-based Universal Dose Denoising for Pencil Beam Scanning Proton Therapy. - Yuzhen Ding; Jason Holmes; Hongying Feng; Martin Bues; Lisa A. McGee; Jean-Claude M. Rwigema; Nathan Y. Yu; Terence S. Sio; Sameer R. Keole; William W. Wong; Steven E. Schild; Jonathan B. Ashman; et al. (CoRR, 2025)