Growing and cultivating the forest genomics database, TreeGenes. - Taylor Falk; Nic Herndon; Emily S. Grau; Sean Buehler; Peter Richter 001; Sumaira Zaman; Eliza M. Baker; Risharde Ramnath; Stephen P. Ficklin; Margaret Staton; Frank Alex Feltus; Sook Jung; et al. (Database J. Biol. Databases Curation, 2019)

virDTL. - Sumaira Zaman; Samuel Sledzieski; Bonnie Berger; Yi-Chieh Wu; Mukul S. Bansal (Zenodo, 2021)

On Partial Gene Transfer and Its Impact on Gene Tree Reconstruction. - Sumaira Zaman; Mukul S. Bansal (RECOMB-CG, 2022)

Reducing the Impact of Domain Rearrangement on Sequence Alignment and Phylogeny Reconstruction. - Sumaira Zaman; Mukul S. Bansal (ISBRA, 2023)

virDTL: Viral Recombination Analysis Through Phylogenetic Reconciliation and Its Application to Sarbecoviruses and SARS-CoV-2. - Sumaira Zaman; Samuel Sledzieski; Bonnie Berger; Yi-Chieh Wu; Mukul S. Bansal (J. Comput. Biol., 2023)