Incorporating fuzzy semantic similarity measure in detecting human protein complexes in PPI network: A multiobjective approach. - Sumanta Ray; Sanghamitra Bandyopadhyay; Anirban Mukhopadhyay 001; Ujjwal Maulik (FUZZ-IEEE, 2013)

Incorporating the type and direction information in predicting novel regulatory interactions between HIV-1 and human proteins using a biclustering approach. - Anirban Mukhopadhyay 001; Sumanta Ray; Ujjwal Maulik (BMC Bioinform., 2014)

DCoSpect: A Novel Differentially Coexpressed Gene Module Detection Algorithm Using Spectral Clustering. - Sumanta Ray; Sinchani Chakraborty; Anirban Mukhopadhyay 001 (FICTA, 2015)

A multiobjective approach for identifying protein complexes and studying their association in multiple disorders. - Sanghamitra Bandyopadhyay; Sumanta Ray; Anirban Mukhopadhyay 001; Ujjwal Maulik (Algorithms Mol. Biol., 2015)

A review of in silico approaches for analysis and prediction of HIV-1-human protein-protein interactions. - Sanghamitra Bandyopadhyay; Sumanta Ray; Anirban Mukhopadhyay 001; Ujjwal Maulik (Briefings Bioinform., 2015)

Discovering preservation pattern from co-expression modules in progression of HIV-1 disease: An eigengene based approach. - Sumanta Ray; Sk Md Mosaddek Hossain; Lutfunnesa Khatun (ICACCI, 2016)

A NMF based approach for integrating multiple data sources to predict HIV-1-human PPIs. - Sumanta Ray; Sanghamitra Bandyopadhyay (BMC Bioinform., 2016)

Discovering Condition Specific Topological Pattern Changes in Coexpression Network: An Application to HIV-1 Progression. - Sumanta Ray; Sanghamitra Bandyopadhyay (IEEE ACM Trans. Comput. Biol. Bioinform., 2016)

Integrating Multi-view Data: A Hypergraph Based Approach. - Saif Ayan Khan; Sumanta Ray (CICBA (2), 2017)

Topological Inquisition into the PPI Networks Associated with Human Diseases Through Graphlet Frequency Distribution. - Debjani Bhattacharjee; Sk Md Mosaddek Hossain; Raziya Sultana; Sumanta Ray (PReMI, 2017)

Preservation affinity in consensus modules among stages of HIV-1 progression. - Sk Md Mosaddek Hossain; Sumanta Ray; Anirban Mukhopadhyay 001 (BMC Bioinform., 2017)

A comprehensive analysis on preservation patterns of gene co-expression networks during Alzheimer's disease progression. - Sumanta Ray; Sk Md Mosaddek Hossain; Lutfunnesa Khatun; Anirban Mukhopadhyay 001 (BMC Bioinform., 2017)

Discovering Perturbation of Modular Structure in HIV Progression by Integrating Multiple Data Sources Through Non-Negative Matrix Factorization. - Sumanta Ray; Ujjwal Maulik (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Identification of Hub Genes and Key Modules in Stomach Adenocarcinoma Using nsNMF-Based Data Integration Technique. - Sk Md Mosaddek Hossain; Sumanta Ray; Anirban Mukhopadhyay 001 (ICIT, 2019)

DTI-SNNFRA: Drug-Target interaction prediction by shared nearest neighbors and fuzzy-rough approximation. - Seikh Mazharul Islam; Sk Md Mosaddek Hossain; Sumanta Ray (CoRR, 2020)

RgCop-A regularized copula based method for gene selection in single-cell RNA-seq data. - Snehalika Lall; Sumanta Ray; Sanghamitra Bandyopadhyay (PLoS Comput. Biol., 2021)

Colored Network Motif Analysis by Dynamic Programming Approach: An Application in Host Pathogen Interaction Network. - Sourav Biswas; Sumanta Ray; Sanghamitra Bandyopadhyay (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Deep variational graph autoencoders for novel host-directed therapy options against COVID-19. - Sumanta Ray; Snehalika Lall; Anirban Mukhopadhyay 001; Sanghamitra Bandyopadhyay; Alexander Schönhuth (Artif. Intell. Medicine, 2022)

sc-REnF: An entropy guided robust feature selection for single-cell RNA-seq data. - Snehalika Lall; Abhik Ghosh; Sumanta Ray; Sanghamitra Bandyopadhyay (Briefings Bioinform., 2022)

Systematic mining of patterns of polysubstance use in a nationwide population survey. - Sumanta Ray; Meghana Desai; Saumyadipta Pyne (Comput. Biol. Medicine, 2022)

A copula based topology preserving graph convolution network for clustering of single-cell RNA-seq data. - Snehalika Lall; Sumanta Ray; Sanghamitra Bandyopadhyay (PLoS Comput. Biol., 2022)

A Deep Integrated Framework for Predicting SARS-CoV2-Human Protein-Protein Interaction. - Sumanta Ray; Snehalika Lall; Sanghamitra Bandyopadhyay (IEEE Trans. Emerg. Top. Comput. Intell., 2022)

Predicting Disease-Associated Genes Through Interaction and Ontology-Based Inference Technique. - Syed Alberuni; Sumanta Ray (CICBA (2), 2023)

An Autoencoder-based Deep Learning Approach for Classifying Colon and Rectum Adenocarcinoma. - Lutfunnesa Khatun; Sk Md Mosaddek Hossain; Sumanta Ray; Anirban Mukhopadhyay 001 (ICCCNT, 2023)

Multiobjective Optimization Algorithms for Bioinformatics - Anirban Mukhopadhyay 001; Sumanta Ray; Ujjwal Maulik; Sanghamitra Bandyopadhyay (Springer, 2024)