Network of coordinated substitutions in the Hepatitis B virus polymerase. - David S. Campo; Zoya Dimitrova; James Lara; Mike Purdy; Hong Thai; Sumathi Ramachandran; Lilia Ganova-Raeva; X. Zhai; Joseph C. Forbi; Chong-Gee Teo; Yuri Khudyakov (BIBM Workshops, 2011)

Assessments of intra- and inter-host diversity of hepatitis C virus using Next Generation Sequencing and Mass spectrometry. - Zoya Dimitrova; David S. Campo; Sumathi Ramachandran; Gilberto Vaughan; Lilia Ganova-Raeva; Yulin Lin; Joseph C. Forbi; Guo-liang Xia; Pavel Skums; Brian L. Pearlman; Yuri Khudyakov (BIBM Workshops, 2011)

Coordinated evolution of the Hepatitis B Virus Polymerase. - David S. Campo; Zoya Dimitrova; James Lara; Mike Purdy; Hong Thai; Sumathi Ramachandran; Lilia Ganova-Raeva; X. Zhai; Joseph C. Forbi; Chong-Gee Teo; Yuri Khudyakov (Silico Biol., 2012)

Evaluation of viral heterogeneity using next-generation sequencing, end-point limiting-dilution and mass spectrometry. - Zoya Dimitrova; David S. Campo; Sumathi Ramachandran; Gilberto Vaughan; Lilia Ganova-Raeva; Yulin Lin; Joseph C. Forbi; Guo-liang Xia; Pavel Skums; Brian L. Pearlman; Yuri Khudyakov (Silico Biol., 2012)

Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling. - Pavel Skums; Alexander Artyomenko; Olga Glebova; Sumathi Ramachandran; Ion I. Mandoiu; David S. Campo; Zoya Dimitrova; Alex Zelikovsky; Yuri Khudyakov (Bioinform., 2015)

Assessment of HCV infection stage as recent or chronic using multi-parameter analysis and machine learning. - Pelin Icer Baykal; Alexander Artyomenko; Sumathi Ramachandran; Yury Khudyakov; Alex Zelikovsky; Pavel Skums (ICCABS, 2017)

Agent-Based in Silico Evolution of HCV Quasispecies. - Alexander Artyomenko; Pelin B. Icer; Pavel Skums; Sumathi Ramachandran; Yury Khudyakov; Alex Zelikovsky (ISBRA, 2017)

QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data. - Pavel Skums; Alex Zelikovsky; Rahul Singh; Walker Gussler; Zoya Dimitrova; Sergey Knyazev; Igor Mandric; Sumathi Ramachandran; David S. Campo; Deeptanshu Jha; Leonid Bunimovich; Elizabeth Costenbader; et al. (Bioinform., 2018)

Automated quality control for a molecular surveillance system. - Seth Sims; Atkinson G. Longmire; David S. Campo; Sumathi Ramachandran; Magdalena Medrzycki; Lilia Ganova-Raeva; Yulin Lin; Amanda Sue; Hong Thai; Alexander Zelikovsky; Yury Khudyakov (BMC Bioinform., 2018)

SOPHIE: Viral Outbreak Investigation and Transmission History Reconstruction in a Joint Phylogenetic and Network Theory Framework. - Pavel Skums; Fatemeh Mohebbi; Vyacheslav Tsyvina; Pelin Icer; Sumathi Ramachandran; Yury Khudyakov (RECOMB, 2022)