DIO: Drug Interaction Ontology - Application to Inferences in Possible Drug-Drug Interactions. - Sumi Yoshikawa; Akihiko Konagaya (METMBS, 2003)

Drug Interaction Ontology (DIO) for Inferences of Possible Drug-drug Interactions. - Sumi Yoshikawa; Kenji Satou; Akihiko Konagaya (MedInfo, 2004)

Drug Interaction Ontology (DIO) and the Resource-Sensitive Logical Inferences. - Mitsuhiro Okada; Yutaro Sugimoto; Sumi Yoshikawa; Akihiko Konagaya (Essays Dedicated to Joseph A. Goguen, 2006)

Seeing Is Knowing: Visualization of Parameter-Parameter Dependencies in Biomedical Network Models. - Akihiko Konagaya; Ryuzo Azuma; Ryo Umetsu; Shingo Ohki; Fumikazu Konishi; Kazumi Matsumura; Sumi Yoshikawa (Grid Computing for Bioinformatics and Computational Biology, 2007)

Ontology-Driven Hypothetic Assertion (OHA) for Drug Interaction Prediction. - Takeshi Arikuma; Sumi Yoshikawa; Kentaro Watanabe; Akihiko Konagaya (IMSCCS, 2007)

Phenosite: a Web Database Integrating the mouse phenotyping Platform and the Experimental Procedures in mice. - Hiroshi Masuya; Sumi Yoshikawa; Naohiko Heida; Tetsuro Toyoda; Shigeharu Wakana; Toshihiko Shiroishi (J. Bioinform. Comput. Biol., 2007)

Discovering Dynamic Characteristics of Biochemical Pathways using Geometric Patterns among Parameter-Parameter Dependencies in Differential Equations. - Ryuzo Azuma; Ryo Umetsu; Shingo Ohki; Fumikazu Konishi; Sumi Yoshikawa; Akihiko Konagaya; Kazumi Matsumura (New Gener. Comput., 2007)

Drug interaction prediction using ontology-driven hypothetical assertion framework for pathway generation followed by numerical simulation. - Takeshi Arikuma; Sumi Yoshikawa; Ryuzo Azuma; Kentaro Watanabe; Kazumi Matsumura; Akihiko Konagaya (BMC Bioinform., 2008)