Modeling of Open, Closed, and Open-Inactivated States of the hERG1 Channel: Structural Mechanisms of the State-Dependent Drug Binding. - Serdar Durdagi; Sumukh Deshpande; Henry J. Duff; Sergei Yu Noskov (J. Chem. Inf. Model., 2012)

An RNA-Seq Bioinformatics Pipeline for Data Processing of Arabidopsis Thaliana Datasets. - Sumukh Deshpande; Anne E. James; Chris H. Franklin; Lindsey J. Leach; Sandy Taramonli; Jianhua Yang (ICBRA, 2017)

PLIT: An alignment-free computational tool for identification of long non-coding RNAs in plant transcriptomic datasets. - Sumukh Deshpande; James Shuttleworth; Jianhua Yang; Sandy Taramonli; Matthew England 001 (Comput. Biol. Medicine, 2019)

Identification of novel flowering genes using RNA-Seq pipeline employing combinatorial approach in Arabidopsis thaliana time-series apical shoot meristem data. - Sumukh Deshpande; Anne E. James; Chris Franklin; Lindsey J. Leach; Jianhua Yang (Int. J. Bioinform. Res. Appl., 2020)

LIFT: lncRNA identification and function-prediction tool. - Sumukh Deshpande; James Shuttleworth; Jianhua Yang; Sandy Taramonli; Matthew England 001 (Int. J. Bioinform. Res. Appl., 2021)