Automated Identification of Synonyms in Biomedical Acronym Sense Inventories. - Genevieve B. Melton; Sungrim Moon; Bridget T. McInnes; Serguei Pakhomov (Louhi@NAACL-HLT, 2010)

Automated Disambiguation of Acronyms and Abbreviations in Clinical Texts: Window and Training Size Considerations. - Sungrim Moon; Serguei V. S. Pakhomov; Genevieve B. Melton (AMIA, 2012)

Word Sense Disambiguation of Clinical Abbreviations with Hyperdimensional Computing. - Sungrim Moon; Bjoern-Toby Berster; Hua Xu 001; Trevor Cohen (AMIA, 2013)

Clinical Acronym/Abbreviation Normalization using a Hybrid Approach. - Yonghui Wu; Buzhou Tang; Min Jiang 007; Sungrim Moon; Joshua C. Denny; Hua Xu 001 (CLEF (Working Notes), 2013)

Applying Active Learning to Word Sense Disambiguation in a Real-Time Setting. - Sungrim Moon; Yukun Chen 001; Jingqi Wang; Joshua C. Denny; Hua Xu 001 (AMIA, 2014)

A study of synonym extraction from clinical texts using semantic vector models. - Sungrim Moon; Trevor Cohen; Hua Xu 001 (AMIA, 2014)

A sense inventory for clinical abbreviations and acronyms created using clinical notes and medical dictionary resources. - Sungrim Moon; Serguei V. S. Pakhomov; Nathan Liu; James O. Ryan; Genevieve B. Melton (J. Am. Medical Informatics Assoc., 2014)

Real Time Active Learning Study for Clinical Named Entity Recognition. - Yukun Chen 001; Sungrim Moon; Thomas A. Lasko; Qiaozhu Mei; Jingqi Wang; Trevor Cohen; Qingxia Chen; Joshua C. Denny; Hua Xu 001 (AMIA, 2015)

Applying Active Learning to Clinical Abbreviation Disambiguation in Real Time. - Sungrim Moon; Yukun Chen 001; Jingqi Wang; Joshua C. Denny; S. Trent Rosenbloom; Ky Nguyen; Tolulola Dawodu; Hua Xu 001 (AMIA, 2016)

Semantic Relatedness and Similarity between Biomedical Concepts. - Sungrim Moon; Trevor Cohen; Hua Xu 001 (AMIA, 2016)

A Study of Active Learning for Document Selection in Clinical Named Entity Recognition. - Qiang Wei 002; Yukun Chen 001; Sungrim Moon; Trevor Cohen; Hua Xu 001 (AMIA, 2016)

UTHealth at SemEval-2016 Task 12: an End-to-End System for Temporal Information Extraction from Clinical Notes. - Hee-Jin Lee; Hua Xu 001; Jingqi Wang; Yaoyun Zhang; Sungrim Moon; Jun Xu 007; Yonghui Wu (SemEval@NAACL-HLT, 2016)

Distinction between medical and non-medical usages of short forms in clinical narratives. - Sungrim Moon; Donna M. Ihrke; Yuqun Zeng; Hongfang Liu (AMIA, 2017)

Bayesian Prediction of Asthma Exacerbation in Children. - Sunghwan Sohn; Young J. Juhn; Sungrim Moon; Chung-Il Wi; Katherine S. King; Euijung Ryu; Hongfang Liu (AMIA, 2017)

Medical concept intersection between outside medical records and consultant notes: A case study in transferred cardiovascular patients. - Sungrim Moon; Sijia Liu 002; Paul R. Kingsbury; David Chen 003; Yanshan Wang; Feichen Shen; Rajeev Chaudhry; Hongfang Liu (BIBM, 2017)

An active learning-enabled annotation system for clinical named entity recognition. - Yukun Chen 001; Thomas A. Lasko; Qiaozhu Mei; Qingxia Chen; Sungrim Moon; Jingqi Wang; Ky Nguyen; Tolulola Dawodu; Trevor Cohen; Joshua C. Denny; Hua Xu 001 (BMC Medical Informatics Decis. Mak., 2017)

Leveraging the Electronic Health Record to Create an Automated Real-time Prognostic Tool for Peripheral Arterial Disease. - Adelaide M. Arruda-Olson; Naveed Afzal; Vishnu Priya Mallipeddi; Ahmad Said; Homam Moussa Pacha; Sungrim Moon; Alisha Chaudhry; Christopher Scott; Kent Bailey; Vinod Kaggal; Gustavo Oderich; Iftikhar J. Kullo; et al. (AMIA, 2018)

Leveraging Electronic Health Records for Identification of Features Associated with Sudden Death for Hypertrophic Cardiomyopathy Patients. - Sungrim Moon; Sijia Liu 002; Sujith Samudrala; Jane L. Shellum; Jeffrey B. Geske; Peter A. Noseworthy; Steve Ommen; Rajeev Chaudhry; Rick Nishimura; Hongfang Liu; Adelaide M. Arruda-Olson (AMIA, 2018)

Clinical information extraction applications: A literature review. - Yanshan Wang; Liwei Wang 010; Majid Rastegar-Mojarad; Sungrim Moon; Feichen Shen; Naveed Afzal; Sijia Liu 002; Yuqun Zeng; Saeed Mehrabi 003; Sunghwan Sohn; Hongfang Liu (J. Biomed. Informatics, 2018)

Modeling asynchronous event sequences with RNNs. - Stephen T. Wu; Sijia Liu 002; Sunghwan Sohn; Sungrim Moon; Chung-Il Wi; Young J. Juhn; Hongfang Liu (J. Biomed. Informatics, 2018)

Usability Evaluation of a Clinical Decision Support Tool for Management of Peripheral Artery Disease Patients. - Alisha Chaudhry; Sungrim Moon; Vinod Kaggal; Paul Wennberg; Thom Rooke; David Liedl; Christopher Scott; Ana Casanegra; Iftikhar J. Kullo; Robert McBane; Jane L. Shellum; Rick Nishimura; et al. (AMIA, 2019)

Adaptation of a Natural Language Processing Algorithm Following Implementation of a New Electronic Health Record. - Sungrim Moon; Vinod Kaggal; Sunghwan Sohn; Hongfang Liu; Rajeev Chaudhry; Adelaide M. Arruda-Olson (AMIA, 2019)

Development of Clinical Concept Extraction Applications: A Methodology Review. - Sunyang Fu; David Chen 003; Sijia Liu 002; Sungrim Moon; Kevin J. Peterson; Feichen Shen; Yanshan Wang; Liwei Wang 010; Andrew Wen; Yiqing Zhao; Sunghwan Sohn; Hongfang Liu (CoRR, 2019)

Adapting and evaluating a deep learning language model for clinical why-question answering. - Andrew Wen; Mohamed Y. Elwazir; Sungrim Moon; Jungwei Fan 001 (CoRR, 2019)

Automated extraction of sudden cardiac death risk factors in hypertrophic cardiomyopathy patients by natural language processing. - Sungrim Moon; Sijia Liu 002; Christopher Scott; Sujith Samudrala; Mohamed M. Abidian; Jeffrey B. Geske; Peter A. Noseworthy; Jane L. Shellum; Rajeev Chaudhry; Steve Ommen; Rick Nishimura; Hongfang Liu; et al. (Int. J. Medical Informatics, 2019)

Salience of Medical Concepts of Inside Clinical Texts and Outside Medical Records for Referred Cardiovascular Patients. - Sungrim Moon; Sijia Liu 002; David Chen 003; Yanshan Wang; Douglas L. Wood; Rajeev Chaudhry; Hongfang Liu; Paul R. Kingsbury (J. Heal. Informatics Res., 2019)

Desiderata for delivering NLP to accelerate healthcare AI advancement and a Mayo Clinic NLP-as-a-service implementation. - Andrew Wen; Sunyang Fu; Sungrim Moon; Mohamed El Wazir; Andrew Rosenbaum; Vinod C. Kaggal; Sijia Liu 002; Sunghwan Sohn; Hongfang Liu; Jungwei Fan 001 (npj Digit. Medicine, 2019)

How You Ask Matters: The Effect of Paraphrastic Questions to BERT Performance on a Clinical SQuAD Dataset. - Sungrim Moon; Jungwei Fan 001 (ClinicalNLP@EMNLP, 2020)

Predicting Section Location of Clinical Sentences using BERT Encoder - A Pilot Study. - Sijia Liu 002; Sunyang Fu; Sungrim Moon; Andrew Wen; Hongfang Liu (AMIA, 2020)

A Perturbation Approach to Assessing BERT Robustness for Different Linguistic Aspects in Medical Question-Answering. - Mohamed Y. Elwazir; Andrew Wen; Sungrim Moon; Jungwei Fan 001 (AMIA, 2020)

A Deep Profiling and Visualization Framework to Audit Clinical Assessment Variation. - Andrew Wen; Feichen Shen; Sungrim Moon; Hongfang Liu; Jungwei Fan 001 (CBMS, 2020)

Clinical concept extraction: A methodology review. - Sunyang Fu; David Chen 003; Huan He; Sijia Liu 002; Sungrim Moon; Kevin J. Peterson; Feichen Shen; Liwei Wang 010; Yanshan Wang; Andrew Wen; Yiqing Zhao; Sunghwan Sohn; et al. (J. Biomed. Informatics, 2020)

Development of a Clinical Question-Answering Corpus with Realistic Multi-Answer Challenges. - Sungrim Moon; Huan He; Jungwei Fan 001 (AMIA, 2021)

A Scoping Review of Informatics Research for Clinical Practice Variation. - Sunghwan Sohn; Sungrim Moon; Larry J. Prokop; Victor M. Montori; Jungwei Fan 001 (AMIA, 2021)

Towards User-centered Corpus Development: Lessons Learnt from Designing and Developing MedTator. - Huan He; Sunyang Fu; Liwei Wang 010; Andrew Wen; Sijia Liu 002; Sungrim Moon; Kurt Miller; Hongfang Liu (AMIA, 2022)

Bridging the Granularity Gap in Family History Information Extracted from Clinical Narratives. - Sungrim Moon; Liwei Wang; Xuan Chen; Nan Wang; Sheila Manemann; Nicholas B. Larson; Suzette J. Bielinski; Hongfang Liu (AMIA, 2022)

Mapping Family History Information from Clinical Narratives to Ontologies or Terminological Resources. - Sungrim Moon; Liwei Wang; Xuan Chen; Nan Wang; Sheila Manemann; Nicholas B. Larson; Suzette J. Bielinski; Hongfang Liu (AMIA, 2022)

Annotation Enhancement of Synthetic Family History Corpus. - Liwei Wang; Sungrim Moon; Sicheng Zhou; Huan He; Hongfang Liu (AMIA, 2022)

Sublanguage Characteristics of Clinical Documents. - Sungrim Moon; Huan He; Hongfang Liu (BIBM, 2022)

Effects of Information Masking in the Task-Specific Finetuning of a Transformers-Based Clinical Question-Answering Framework. - Sungrim Moon; Huan He; Jungwei Fan 001 (ICHI, 2022)

Evaluation of mCODE Coverage in EHR: a Scoping Review of Cancer Natural Language Processing. - Liwei Wang 010; Sunyang Fu; Andrew Wen; Xiaoyang Ruan; Huan He; Sijia Liu 002; Sungrim Moon; Michelle Mai; Irbaz Bin Riaz; Nan Wang; Ping Yang; Hua Xu 001; et al. (ICHI, 2022)

RxWhyQA: a clinical question-answering dataset with the challenge of multi-answer questions. - Sungrim Moon; Huan He; Hongfang Liu; Jungwei Fan 001 (CoRR, 2022)

Quality assessment of functional status documentation in EHRs across different healthcare institutions. - Sunyang Fu; Maria Vassilaki; Omar A. Ibrahim; Ronald C. Petersen; Sandeep R. Pagali; Jennifer St Sauver; Sungrim Moon; Liwei Wang 010; Jungwei Fan 001; Hongfang Liu; Sunghwan Sohn (Frontiers Digit. Health, 2022)

A scoping review of medical practice variation research within the informatics literature. - Sunghwan Sohn; Sungrim Moon; Larry J. Prokop; Victor M. Montori; J. Wilfred Fan (Int. J. Medical Informatics, 2022)

Computational drug repurposing based on electronic health records: a scoping review. - Nansu Zong; Andrew Wen; Sungrim Moon; Sunyang Fu; Liwei Wang 010; Yiqing Zhao; Yue Yu; Ming Huang 006; Yanshan Wang; Gang Zheng; Michelle M. Mielke; James R. Cerhan; et al. (npj Digit. Medicine, 2022)

Aligning Orphanet Classification to Identify Disease Characteristics among Rare Disease Clusters. - Sungrim Moon; Jessica Maine; Ewy A. Mathé; Qian Zhu 003 (BIBM, 2024)

FedFSA: Hybrid and federated framework for functional status ascertainment across institutions. - Sunyang Fu; Heling Jia; Maria Vassilaki; Vipina Kuttichi Keloth; Yifang Dang; Yujia Zhou 003; Muskan Garg; Ronald C. Petersen; Jennifer St Sauver; Sungrim Moon; Liwei Wang 010; Andrew Wen; et al. (J. Biomed. Informatics, 2024)