BRONCO: Biomedical entity Relation ONcology COrpus for extracting gene-variant-disease-drug relations. - Kyubum Lee; Sunwon Lee; Sungjoon Park; Sunkyu Kim; Suhkyung Kim; Kwanghun Choi; Aik Choon Tan; Jaewoo Kang (Database J. Biol. Databases Curation, 2016)

HiPub: translating PubMed and PMC texts to networks for knowledge discovery. - Kyubum Lee; Won-Ho Shin; Byounggun Kim; Sunwon Lee; Yonghwa Choi; Sunkyu Kim; Minji Jeon; Aik Choon Tan; Jaewoo Kang (Bioinform., 2016)

ChimerDB 3.0: an enhanced database for fusion genes from cancer transcriptome and literature data mining. - Myunggyo Lee; Kyubum Lee; Namhee Yu; Insu Jang; Ikjung Choi; Pora Kim; Ye Eun Jang; Byounggun Kim; Sunkyu Kim; Byungwook Lee; Jaewoo Kang; Sanghyuk Lee (Nucleic Acids Res., 2017)

Deep learning of mutation-gene-drug relations from the literature. - Kyubum Lee; Byounggun Kim; Yonghwa Choi; Sunkyu Kim; Won-Ho Shin; Sunwon Lee; Sungjoon Park; Seongsoon Kim; Aik Choon Tan; Jaewoo Kang (BMC Bioinform., 2018)

In silico drug combination discovery for personalized cancer therapy. - Minji Jeon; Sunkyu Kim; Sungjoon Park; Heewon Lee; Jaewoo Kang (BMC Syst. Biol., 2018)

ReSimNet: drug response similarity prediction using Siamese neural networks. - Minji Jeon; Donghyeon Park; Jinhyuk Lee; Hwisang Jeon; Miyoung Ko; Sunkyu Kim; Yonghwa Choi; Aik Choon Tan; Jaewoo Kang (Bioinform., 2019)

Bipartite Link Prediction by Intra-Class Connection Based Triadic Closure. - Jungwoon Shin; Keonwoo Kim; Donghyeon Park; Sunkyu Kim; Jaewoo Kang (IEEE Access, 2020)

Improved survival analysis by learning shared genomic information from pan-cancer data. - Sunkyu Kim; Keonwoo Kim; Junseok Choe; Inggeol Lee; Jaewoo Kang (Bioinform., 2020)

BioBERT: a pre-trained biomedical language representation model for biomedical text mining. - Jinhyuk Lee; Wonjin Yoon; Sungdong Kim; Donghyeon Kim; Sunkyu Kim; Chan Ho So; Jaewoo Kang (Bioinform., 2020)

Building a PubMed knowledge graph. - Jian Xu 003; Sunkyu Kim; Min Song 001; Minbyul Jeong; Donghyeon Kim; Jaewoo Kang; Justin F. Rousseau; Xin Li 091; Weijia Xu; Vetle I. Torvik; Yi Bu 001; Chongyan Chen; et al. (CoRR, 2020)

ChimerDB 4.0: an updated and expanded database of fusion genes. - Ye Eun Jang; Insu Jang; Sunkyu Kim; Subin Cho; Daehan Kim; Keonwoo Kim; Jaewon Kim; Jimin Hwang; Sangok Kim; Jaesang Kim; Jaewoo Kang; Byungwook Lee; et al. (Nucleic Acids Res., 2020)

Predicting mechanism of action of novel compounds using compound structure and transcriptomic signature coembedding. - Gwanghoon Jang; Sungjoon Park; Sanghoon Lee; Sunkyu Kim; Se-Jeong Park; Jaewoo Kang (Bioinform., 2021)

Enhancing Clinical Outcome Predictions through Auxiliary Loss and Sentence-Level Self-Attention. - Sanghoon Lee; Gwanghoon Jang; Chanhwi Kim; Se-Jeong Park; Kiwoong Yoo; Jihye Kim 004; Sunkyu Kim; Jaewoo Kang (BIBM, 2023)

Biomedical relation extraction with knowledge base-refined weak supervision. - Wonjin Yoon; Sean S. Yi; Richard Jackson; Hyunjae Kim; Sunkyu Kim; Jaewoo Kang (Database J. Biol. Databases Curation, 2023)

Evaluation of crowdsourced mortality prediction models as a framework for assessing artificial intelligence in medicine. - Timothy Bergquist; Thomas Schaffter; Yao Yan; Thomas Yu; Justin Prosser; Jifan Gao; Guanhua Chen 002; Lukasz Charzewski; Zofia Nawalany; Ivan Brugere; Renata Retkute; Alidivinas Prusokas; et al. (J. Am. Medical Informatics Assoc., 2023)

KU AIGEN ICL EDI@BC8 Track 3: Advancing Phenotype Named Entity Recognition and Normalization for Dysmorphology Physical Examination Reports. - Hajung Kim; Chanhwi Kim; Jiwoong Sohn; Tim Beck; Marek Rei; Sunkyu Kim; T. Ian Simpson; Joram M. Posma; Antoine Lain; Mujeen Sung; Jaewoo Kang (CoRR, 2025)