Construction of the influenza A virus infection-induced cell-specific inflammatory regulatory network based on mutual information and optimization. - Suoqin Jin; Xiufen Zou (BMC Syst. Biol., 2013)

Estimation of control Energy and control Strategies for Complex Networks. - Dingjie Wang; Suoqin Jin; Fang-Xiang Wu; Xiufen Zou (Adv. Complex Syst., 2015)

Mathematical Modeling and Nonlinear Dynamical Analysis of Cell Growth in Response to Antibiotics. - Suoqin Jin; Lili Niu; Gang Wang 018; Xiufen Zou (Int. J. Bifurc. Chaos, 2015)

scEpath: energy landscape-based inference of transition probabilities and cellular trajectories from single-cell transcriptomic data. - Suoqin Jin; Adam L. Maclean; Tao Peng; Qing Nie (Bioinform., 2018)

Trajectory Control in Nonlinear Networked Systems and Its Applications to Complex Biological Systems. - Suoqin Jin; Dingjie Wang; Xiufen Zou (SIAM J. Appl. Math., 2018)

scRCMF: Identification of Cell Subpopulations and Transition States From Single-Cell Transcriptomes. - Xiaoying Zheng; Suoqin Jin; Qing Nie; Xiufen Zou (IEEE Trans. Biomed. Eng., 2020)

Integrating multiscale mathematical modeling and multidimensional data reveals the effects of epigenetic instability on acquired drug resistance in cancer. - Shun Wang 001; Jinzhi Lei; Xiufen Zou; Suoqin Jin (PLoS Comput. Biol., 2025)

PITCH: A Pathway-Induced Prioritization of Personalized Cancer Driver Genes Based on Higher-Order Interactions. - Yuhe Wang; Suoqin Jin; Xiufen Zou (IEEE J. Biomed. Health Informatics, 2025)