SFAPS: An R package for structure/function analysis of protein sequences based on informational spectrum method. - Suping Deng; Jing-Hua Yuan; Deshuang Huang; Zhen Wang 020 (BIBM, 2013)

An Integrated Method for Functional Analysis of Microbial Communities by Gene Ontology Based on 16S miRNA Gene. - Suping Deng; Kai Yang (ICIC (3), 2013)

A SVM-Based System for Predicting Protein-Protein Interactions Using a Novel Representation of Protein Sequences. - Zhuhong You; Zhong Ming 001; Ben Niu; Suping Deng; Zexuan Zhu (ICIC (1), 2013)

Prediction of peptide drift time in ion mobility mass spectrometry from sequence-based features. - Bing Wang 004; Jun Zhang 011; Peng Chen 001; Zhiwei Ji; Shuping Deng; Chi Li (BMC Bioinform., 2013)

A two-stage geometric method for detecting unreliable links in protein-protein networks. - Lin Zhu 008; Suping Deng; De-Shuang Huang (BIBM, 2014)

Prediction of protein-protein interactions from amino acid sequences using a novel multi-scale continuous and discontinuous feature set. - Zhu-Hong You; Lin Zhu 008; Chun-Hou Zheng 001; Hongjie Yu; Suping Deng; Zhen Ji (BMC Bioinform., 2014)

Predicting dynamic deformation of retaining structure by LSSVR-based time series method. - Zhiwei Ji; Bing Wang 004; Suping Deng; Zhuhong You (Neurocomputing, 2014)

An integrated strategy for functional analysis of microbial communities based on gene ontology and 16S rRNA gene. - Suping Deng; De-Shuang Huang (Int. J. Data Min. Bioinform., 2015)

Understanding tissue-specificity with human tissue-specific regulatory networks. - Wei-Li Guo; Lin Zhu 008; Suping Deng; Xing-Ming Zhao; Deshuang Huang (Sci. China Inf. Sci., 2016)

Predicting Hub Genes Associated with Cervical Cancer through Gene Co-Expression Networks. - Suping Deng; Lin Zhu 008; De-Shuang Huang (IEEE ACM Trans. Comput. Biol. Bioinform., 2016)

ChIP-PIT: Enhancing the Analysis of ChIP-Seq Data Using Convex-Relaxed Pair-Wise Interaction Tensor Decomposition. - Lin Zhu 008; Wei-Li Guo; Suping Deng; De-Shuang Huang (IEEE ACM Trans. Comput. Biol. Bioinform., 2016)

Editorial: Special Issue on Advanced Intelligent Computing: Theory and Applications. - Lin Zhu 008; Suping Deng; De-Shuang Huang (Neurocomputing, 2017)

Identifying Spurious Interactions in the Protein-Protein Interaction Networks Using Local Similarity Preserving Embedding. - Lin Zhu 008; Suping Deng; Zhu-Hong You; De-Shuang Huang (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)