Benchmarking tools for the alignment of functional noncoding DNA. - Daniel A. Pollard; Casey M. Bergman; Jens Stoye; Susan E. Celniker; Michael B. Eisen (BMC Bioinform., 2004)

Correction: Benchmarking tools for the alignment of functional noncodingDNA. - Daniel A. Pollard; Casey M. Bergman; Jens Stoye; Susan E. Celniker; Michael B. Eisen (BMC Bioinform., 2004)

Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster. - Casey M. Bergman; Joseph W. Carlson; Susan E. Celniker (Bioinform., 2005)

Comparative Analysis of Spatial Patterns of Gene Expression in Drosophila melanogaster Imaginal Discs. - Cyrus L. Harmon; Parvez Ahammad; Ann Hammonds; Richard Weiszmann; Susan E. Celniker; Shankar Sastry 001; Gerald M. Rubin (RECOMB, 2007)