FGKA: a Fast Genetic K-means Clustering Algorithm. - Yi Lu 015; Shiyong Lu; Farshad Fotouhi; Youping Deng; Susan J. Brown (SAC, 2004)

Computational identification of novel chitinase-like proteins in the Drosophila melanogaster genome. - Qingsong Zhu; Youping Deng; Phaneendra Vanka; Susan J. Brown; Subbaratnam Muthukrishnan; Karl J. Kramer (Bioinform., 2004)

Incremental genetic K-means algorithm and its application in gene expression data analysis. - Yi Lu 015; Shiyong Lu; Farshad Fotouhi; Youping Deng; Susan J. Brown (BMC Bioinform., 2004)

Determination of cluster number in clustering microarray data. - Judong Shen; Shing I. Chang; E. Stanley Lee; Youping Deng; Susan J. Brown (Appl. Math. Comput., 2005)

An Integrated Web-Based Model for Management, Analysis and Retrieval of EST Biological Information. - Youping Deng; Yinghua Dong; Susan J. Brown; Chaoyang Zhang (APWeb Workshops, 2006)

Prediction of RNA-Binding Residues in Protein Sequences Using Support Vector Machines. - Liangjiang Wang; Susan J. Brown (EMBC, 2006)

Prediction of Dna-binding Residues from Sequence Features. - Liangjiang Wang; Susan J. Brown (J. Bioinform. Comput. Biol., 2006)

BindN: a web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences. - Liangjiang Wang; Susan J. Brown (Nucleic Acids Res., 2006)

BeetleBase: the model organism database for Tribolium castaneum. - Liangjiang Wang; Suzhi Wang; Yonghua Li; Martin S. R. Paradesi; Susan J. Brown (Nucleic Acids Res., 2007)

Exploring Alternative Splicing Features Using Support Vector Machines. - Jing Xia; Doina Caragea; Susan J. Brown (BIBM, 2008)

Prediction of alternatively spliced exons using Support Vector Machines. - Jing Xia; Doina Caragea; Susan J. Brown (Int. J. Data Min. Bioinform., 2010)

BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. - Hee Shin Kim; Terence Murphy; Jing Xia; Doina Caragea; Yoonseong Park; Richard W. Beeman; Marcé D. Lorenzen; Stephen Butcher; J. Robert Manak; Susan J. Brown (Nucleic Acids Res., 2010)

Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community. - Surya Saha; Prashant S. Hosmani; Krystal Villalobos-Ayala; Sherry Miller; Teresa Shippy; Mirella Flores; Andrew Rosendale; Chris Cordola; Tracey Bell; Hannah Mann; Gabe DeAvila; Daniel DeAvila; et al. (Database J. Biol. Databases Curation, 2017)

A quick guide for student-driven community genome annotation. - Prashant S. Hosmani; Teresa Shippy; Sherry Miller; Joshua B. Benoit; Monica C. Munoz-Torres; Mirella Flores; Lukas A. Mueller; Helen Wiersma-Koch; Tom D'Elia; Susan J. Brown; Surya Saha (PLoS Comput. Biol., 2019)