Constructing Comparative Genome Maps with Unresolved Marker Order. - Debra Goldberg; Susan McCouch; Jon M. Kleinberg (Pacific Symposium on Biocomputing, 2002)

Gramene: a resource for comparative grass genomics. - Doreen Ware; Pankaj Jaiswal; Junjian Ni; Xiaokang Pan; Kuan Y. Chang; Kenneth Clark; Leonid Teytelman; Steven Schmidt; Wei Zhao 005; Samuel Cartinhour; Susan McCouch; Lincoln Stein (Nucleic Acids Res., 2002)

Gramene: a bird's eye view of cereal genomes. - Pankaj Jaiswal; Junjian Ni; Immanuel Yap; Doreen Ware; William Spooner; Ken Youens-Clark; Liya Ren; Chengzhi Liang; Wei Zhao 005; Kiran Ratnapu; Benjamin Faga; Payan Canaran; et al. (Nucleic Acids Res., 2006)

The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations. - Shulamit Avraham; Chih-Wei Tung; Katica Ilic; Pankaj Jaiswal; Elizabeth A. Kellogg; Susan McCouch; Anuradha Pujar; Leonore Reiser; Seung Yon Rhee; Martin M. Sachs; Mary L. Schaeffer; Lincoln Stein; et al. (Nucleic Acids Res., 2008)

Gramene: a growing plant comparative genomics resource. - Chengzhi Liang; Pankaj Jaiswal; Claire Hebbard; Shuly Avraham; Edward S. Buckler; Terry M. Casstevens; Bonnie L. Hurwitz; Susan McCouch; Junjian Ni; Anuradha Pujar; Dean Ravenscroft; Liya Ren; et al. (Nucleic Acids Res., 2008)

Gramene QTL database: development, content and applications. - Junjian Ni; Anuradha Pujar; Ken Youens-Clark; Immanuel Yap; Pankaj Jaiswal; Isaak Y. Tecle; Chih-Wei Tung; Liya Ren; William Spooner; Xuehong Wei; Shuly Avraham; Doreen Ware; et al. (Database J. Biol. Databases Curation, 2009)

ALCHEMY: a reliable method for automated SNP genotype calling for small batch sizes and highly homozygous populations. - Mark H. Wright; Chih-Wei Tung; Keyan Zhao; Andy Reynolds; Susan McCouch; Carlos D. Bustamante (Bioinform., 2010)

Gramene database in 2010: updates and extensions. - Ken Youens-Clark; Edward S. Buckler; Terry M. Casstevens; Charles Chen; Genevieve DeClerck; Paul S. Derwent; Palitha Dharmawardhana; Pankaj Jaiswal; Paul J. Kersey; A. S. Karthikeyan; Jerry Lu; Susan McCouch; et al. (Nucleic Acids Res., 2011)