Reconstruction of regulatory networks through temporal enrichment profiling and its application to H1N1 influenza viral infection. - Elena Zaslavsky; German Nudelman; Susanna Marquez; Uri Hershberg; Boris M. Hartmann; Juilee Thakar; Stuart C. Sealfon; Steven H. Kleinstein (BMC Bioinform., 2013)

Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequences. - Erand Smakaj; Lmar Babrak; Mats Ohlin; Mikhail Shugay; Bryan S. Briney; Deniz Tosoni; Christopher Galli; Vendi Grobelsek; Igor D'Angelo; Branden J. Olson; Sai T. Reddy; Victor Greiff; et al. (Bioinform., 2020)

nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework. - Gisela Gabernet; Susanna Marquez; Robert Bjornson; Alexander Peltzer; Hailong Meng; Edel Aron; Noah Y. Lee; Cole G. Jensen; David Ladd; Mark Polster; Friederike Hanssen; Simon Heumos; et al. (PLoS Comput. Biol., 2024)