Robust Perron Cluster Analysis for Various Applications in Computational Life Science. - Marcus Weber; Susanna Kube (CompLife, 2005)

Stable Computation of Probability Densities for Metastable Dynamical Systems. - Marcus Weber; Susanna Kube; Lionel Walter; Peter Deuflhard (Multiscale Model. Simul., 2007)

Monte Carlo sampling of Wigner functions and surface hopping quantum dynamics. - Susanna Kube; Caroline Lasser; Marcus Weber (J. Comput. Phys., 2009)

Computing Expectation Values for Molecular Quantum Dynamics. - Caroline Lasser; Susanna Röblitz (SIAM J. Sci. Comput., 2010)

Fuzzy spectral clustering by PCCA+: application to Markov state models and data classification. - Susanna Röblitz; Marcus Weber (Adv. Data Anal. Classif., 2013)

Parameter identification in large kinetic networks with BioPARKIN - Thomas Dierkes; Susanna Röblitz; Moritz Wade; Peter Deuflhard (CoRR, 2013)

Patient-specific models from inter-patient biological models and clinical records. - Enrico Tronci; Toni Mancini; Ivano Salvo; Stefano Sinisi; Federico Mari; Igor Melatti; Annalisa Massini; Francesco Davì; Thomas Dierkes; Rainald Ehrig; Susanna Röblitz; Brigitte Leeners; et al. (FMCAD, 2014)

Solution of the chemical master equation by radial basis functions approximation with interface tracking. - Ivan Kryven; Susanna Röblitz; Christof Schütte (BMC Syst. Biol., 2015)

Computing Personalised Treatments through In Silico Clinical Trials. - Toni Mancini; Federico Mari; Annalisa Massini; Igor Melatti; Ivano Salvo; Stefano Sinisi; Enrico Tronci; Rainald Ehrig; Susanna Röblitz; Brigitte Leeners (RCRA@FLoC, 2018)

Correspondence of Trap Spaces in Different Models of Bioregulatory Networks. - Robert Schwieger; Heike Siebert; Susanna Röblitz (SIAM J. Appl. Dyn. Syst., 2018)

Modeling of Multivalent Ligand-Receptor Binding Measured by kinITC. - Franziska Erlekam; Sinaida Igde; Susanna Röblitz; Laura Hartmann; Marcus Weber (Comput., 2019)

Uncovering Dynamic Structures Within Cyclic Attractors of Asynchronous Boolean Networks with Spectral Clustering. - Maryam Yousefian; Elisa Tonello; Anna-Simone Frank; Heike Siebert; Susanna Röblitz (CMSB, 2024)

Spectral clustering of Markov chain transition matrices with complex eigenvalues. - Anna-Simone Frank; Alexander Sikorski; Susanna Röblitz (J. Comput. Appl. Math., 2024)

Exploring Metastable Dynamics of Gene Regulatory Networks with ISOKANN. - Maryam Yousefian; Luca Donati; Alexander Sikorski; Marcus Weber; Susanna Röblitz (CMSB, 2025)

Efficient construction of Markov state models for stochastic gene regulatory networks by domain decomposition. - Maryam Yousefian; Anna-Simone Frank; Marcus Weber; Susanna Röblitz (BMC Bioinform., 2025)