IMG/M 4 version of the integrated metagenome comparative analysis system. - Victor M. Markowitz; I-Min A. Chen; Ken Chu; Ernest Szeto; Krishna Palaniappan; Manoj Pillay; Anna Ratner; Jinghua Huang; Ioanna Pagani; Susannah Tringe; Marcel Huntemann; Konstantinos Billis; et al. (Nucleic Acids Res., 2014)

Elviz - exploration of metagenome assemblies with an interactive visualization tool. - Michael Cantor; Henrik Nordberg; Tatyana Smirnova; Matthias Hess; Susannah Tringe; Inna Dubchak (BMC Bioinform., 2015)

Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization. - Emily Goren; Chong Wang; Zhulin He; Amy M. Sheflin; Dawn Chiniquy; Jessica E. Prenni; Susannah Tringe; Daniel P. Schachtman; Peng Liu 007 (BMC Bioinform., 2021)

Poisson hurdle model-based method for clustering microbiome features. - Zhili Qiao; Elle Barnes; Susannah Tringe; Daniel P. Schachtman; Peng Liu 007 (Bioinform., 2023)