Diffusion Tensor Imaging and Axonal Tracking in the Human Brainstem. - Bram Stieltjes; Walter E. Kaufmann; Peter C. M. van Zijl; Kim Fredericksen; Godfrey D. Pearlson; Meiyappan Solaiyappan; Susumu Mori (NeuroImage, 2001)

Statistically-based reorientation of diffusion tensor field. - Dongrong Xu; Susumu Mori; Dinggang Shen; Christos Davatzikos (ISBI, 2002)

A Framework for Callosal Fiber Distribution Analysis. - Dongrong Xu; Susumu Mori; Meiyappan Solaiyappan; Peter C. M. van Zijl; Christos Davatzikos (NeuroImage, 2002)

Three-Dimensional Diffusion Tensor Magnetic Resonance Microimaging of Adult Mouse Brain and Hippocampus. - Jiangyang Zhang; Peter C. M. van Zijl; Susumu Mori (NeuroImage, 2002)

Functional activation using apparent diffusion coefficient-dependent contrast allows better spatial localization to the neuronal activity: evidence using diffusion tensor imaging and fiber tracking. - Allen W. Song; Todd B. Harshbarger; Tianlu Li; Keun-Ho Kim; Kâmil Ugurbil; Susumu Mori; Dae-Shik Kim (NeuroImage, 2003)

Three-dimensional anatomical characterization of the developing mouse brain by diffusion tensor microimaging. - Jiangyang Zhang; Linda J. Richards; Paul Yarowsky; Hao Huang 016; Peter C. M. van Zijl; Susumu Mori (NeuroImage, 2003)

Towards effective and rewarding data sharing. - Daniel Gardner; Arthur W. Toga; Giorgio A. Ascoli; Jackson T. Beatty; James F. Brinkley; Anders M. Dale; Peter T. Fox; Esther P. Gardner; John S. George; Nigel H. Goddard; Kristen M. Harris; Edward Herskovits; et al. (Neuroinformatics, 2003)

Diffusion tensor MRI visualizes decreased subcortical fiber connectivity in focal cortical dysplasia. - Seung-Koo Lee; Dong Ik Kim; Susumu Mori; Jinna Kim; Heung Dong Kim; Kyoung Heo; Byung In Lee (NeuroImage, 2004)

DTI tractography based parcellation of white matter: Application to the mid-sagittal morphology of corpus callosum. - Hao Huang 016; Jiangyang Zhang; Hangyi Jiang; Setsu Wakana; Lidia Poetscher; Michael I. Miller; Peter C. M. van Zijl; Argye E. Hillis; Robert Wytik; Susumu Mori (NeuroImage, 2005)

Mapping postnatal mouse brain development with diffusion tensor microimaging. - Jiangyang Zhang; Michael I. Miller; Celine Plachez; Linda J. Richards; Paul Yarowsky; Peter C. M. van Zijl; Susumu Mori (NeuroImage, 2005)

Spatiotemporal maturation patterns of murine brain quantified by diffusion tensor MRI and deformation-based morphometry. - Ragini Verma; Susumu Mori; Dinggang Shen; Paul Yarowsky; Jiangyang Zhang; Christos Davatzikos (Proc. Natl. Acad. Sci. USA, 2005)

Diffeomorphic Matching of Diffusion Tensor Images. - Yan Cao; Michael I. Miller; Susumu Mori; Raimond L. Winslow; Laurent Younes (CVPR Workshops, 2006)

Characterization of Mouse Brain and Its Development using Diffusion Tensor Imaging and Computational Techniques. - Jiangyang Zhang; Linda J. Richards; Michael I. Miller; Paul Yarowsky; Peter C. M. van Zijl; Susumu Mori (EMBC, 2006)

DtiStudio: Resource program for diffusion tensor computation and fiber bundle tracking. - Hangyi Jiang; Peter C. M. van Zijl; Jinsuh Kim; Godfrey D. Pearlson; Susumu Mori (Comput. Methods Programs Biomed., 2006)

Pediatric diffusion tensor imaging: Normal database and observation of the white matter maturation in early childhood. - Laurent Hermoye; Christine Saint-Martin; Guy Cosnard; Seung-Koo Lee; Jinna Kim; Marie-Cécile Nassogne; Renaud Menten; Philippe Clapuyt; Pamela K. Donohue; Kegang Hua; Setsu Wakana; Hangyi Jiang; et al. (NeuroImage, 2006)

White and gray matter development in human fetal, newborn and pediatric brains. - Hao Huang 016; Jiangyang Zhang; Setsu Wakana; Weihong Zhang; Tianbo Ren; Linda J. Richards; Paul Yarowsky; Pamela K. Donohue; Ernest Graham; Peter C. M. van Zijl; Susumu Mori (NeuroImage, 2006)

Diffusion tensor imaging in children and adolescents: Reproducibility, hemispheric, and age-related differences. - David Bonekamp; Lidia M. Nagae; Mahaveer Degaonkar; Melissa Matson; Wael M. A. Abdalla; Peter B. Barker; Susumu Mori; Alena Horská (NeuroImage, 2007)

Effects of diffusion weighting schemes on the reproducibility of DTI-derived fractional anisotropy, mean diffusivity, and principal eigenvector measurements at 1.5T. - Bennett A. Landman; Jonathan A. D. Farrell; Craig K. Jones; Seth A. Smith; Jerry L. Prince; Susumu Mori (NeuroImage, 2007)

Multiparametric magnetic resonance imaging analysis of the corticospinal tract in multiple sclerosis. - Daniel S. Reich; Seth A. Smith; Kathleen M. Zackowski; Eliza M. Gordon-Lipkin; Craig K. Jones; Jonathan A. D. Farrell; Susumu Mori; Peter C. M. van Zijl; Peter A. Calabresi (NeuroImage, 2007)

Reproducibility of quantitative tractography methods applied to cerebral white matter. - Setsu Wakana; Arvind Caprihan; Martina M. Panzenboeck; James H. Fallon; Michele Perry; Randy L. Gollub; Kegang Hua; Jiangyang Zhang; Hangyi Jiang; Prachi Dubey; Ari Blitz; Peter C. M. van Zijl; et al. (NeuroImage, 2007)

Evidence of slow maturation of the superior longitudinal fasciculus in early childhood by diffusion tensor imaging. - Jiangyang Zhang; Alan C. Evans; Laurent Hermoye; Seung-Koo Lee; Setsu Wakana; Weihong Zhang; Pamela K. Donohue; Michael I. Miller; Hao Huang 016; Xiaoqing Wang; Peter C. M. van Zijl; Susumu Mori (NeuroImage, 2007)

Tract probability maps in stereotaxic spaces: Analyses of white matter anatomy and tract-specific quantification. - Kegang Hua; Jiangyang Zhang; Setsu Wakana; Hangyi Jiang; Xin Li 007; Daniel S. Reich; Peter A. Calabresi; James J. Pekar; Peter C. M. van Zijl; Susumu Mori (NeuroImage, 2008)

Stereotaxic white matter atlas based on diffusion tensor imaging in an ICBM template. - Susumu Mori; Kenichi Oishi; Hangyi Jiang; Li Jiang; Xin Li 007; Kazi Akhter; Kegang Hua; Andreia V. Faria; Asif Mahmood; Roger P. Woods; Arthur W. Toga; G. Bruce Pike; et al. (NeuroImage, 2008)

Human brain white matter atlas: Identification and assignment of common anatomical structures in superficial white matter. - Kenichi Oishi; Karl Zilles; Katrin Amunts; Andreia Faria; Hangyi Jiang; Xin Li 007; Kazi Akhter; Kegang Hua; Roger P. Woods; Arthur W. Toga; G. Bruce Pike; Pedro Rosa-Neto; et al. (NeuroImage, 2008)

Automated fiber tracking of human brain white matter using diffusion tensor imaging. - Weihong Zhang; Alessandro Olivi; Samuel J. Hertig; Peter C. M. van Zijl; Susumu Mori (NeuroImage, 2008)

Multi-contrast large deformation diffeomorphic metric mapping for diffusion tensor imaging. - Can Ceritoglu; Kenichi Oishi; Xin Li 007; Ming-Chung Chou; Laurent Younes; Marilyn S. Albert; Constantine Lyketsos; Peter C. M. van Zijl; Michael I. Miller; Susumu Mori (NeuroImage, 2009)

Regionally-specific diffusion tensor imaging in mild cognitive impairment and Alzheimer's disease. - Michelle M. Mielke; Nicholas A. Kozauer; Kwun Chuen Gary Chan; M. George; J. Toroney; M. Zerrate; Karen Bandeen-Roche; Mei-Cheng Wang; Peter C. M. van Zijl; James J. Pekar; Susumu Mori; Constantine G. Lyketsos; et al. (NeuroImage, 2009)

Atlas-based whole brain white matter analysis using large deformation diffeomorphic metric mapping: Application to normal elderly and Alzheimer's disease participants. - Kenichi Oishi; Andreia Faria; Hangyi Jiang; Xin Li 007; Kazi Akhter; Jiangyang Zhang; John T. Hsu; Michael I. Miller; Peter C. M. van Zijl; Marilyn S. Albert; Constantine Lyketsos; Roger P. Woods; et al. (NeuroImage, 2009)

Landmark-referenced voxel-based analysis of diffusion tensor images of the brainstem white matter tracts: Application in patients with middle cerebral artery stroke. - Weihong Zhang; Xin Li 007; Jiangyang Zhang; Andreas R. Luft; Daniel F. Hanley; Peter C. M. van Zijl; Michael I. Miller; Laurent Younes; Susumu Mori (NeuroImage, 2009)

Study of white matter anatomy and 3D tract reconstruction by diffusion tensor imaging. - Andreia Faria; Kenichi Oishi; Susumu Mori (Int. J. Imaging Syst. Technol., 2010)

Atlas-based analysis of neurodevelopment from infancy to adulthood using diffusion tensor imaging and applications for automated abnormality detection. - Andreia Faria; Jiangyang Zhang; Kenichi Oishi; Xin Li 007; Hangyi Jiang; Kazi Akhter; Laurent Hermoye; Seung-Koo Lee; Alexander Hoon; Elaine Stashinko; Michael I. Miller; Peter C. M. van Zijl; et al. (NeuroImage, 2010)

Automated vs. conventional tractography in multiple sclerosis: Variability and correlation with disability. - Daniel S. Reich; Arzu Ozturk; Peter A. Calabresi; Susumu Mori (NeuroImage, 2010)

Longitudinal characterization of brain atrophy of a Huntington's disease mouse model by automated morphological analyses of magnetic resonance images. - Jiangyang Zhang; Qi Peng; Qing Li; Neda Jahanshad; Zhipeng Hou; Mali Jiang; Naoki Masuda; Douglas R. Langbehn; Michael I. Miller; Susumu Mori; Christopher A. Ross; Wenzhen Duan (NeuroImage, 2010)

Atlas-guided tract reconstruction for automated and comprehensive examination of the white matter anatomy. - Yajing Zhang; Jiangyang Zhang; Kenichi Oishi; Andreia Faria; Hangyi Jiang; Xin Li 007; Kazi Akhter; Pedro Rosa-Neto; G. Bruce Pike; Alan C. Evans; Arthur W. Toga; Roger P. Woods; et al. (NeuroImage, 2010)

Simultaneous segmentation and inhomogeneity correction in magnetic resonance images. - Yue Li; Julie Hoover-Fong; John A. Carrino; Susumu Mori (EMBC, 2011)

Superficially Located White Matter Structures Commonly Seen in the Human and the Macaque Brain with Diffusion Tensor Imaging. - Kenichi Oishi; Hao Huang 016; Takashi Yoshioka; Sarah H. Ying; David S. Zee; Karl Zilles; Katrin Amunts; Roger P. Woods; Arthur W. Toga; G. Bruce Pike; Pedro Rosa-Neto; Alan C. Evans; et al. (Brain Connect., 2011)

Diffuse Abnormality of Low to Moderately Organized White Matter in Schizophrenia. - Sarah A. J. Reading; Kenichi Oishi; Graham W. Redgrave; Julie McEntee; Megan Shanahan; Nadine Yoritomo; Laurent Younes; Susumu Mori; Michael I. Miller; Peter C. M. van Zijl; Russell L. Margolis; Christopher A. Ross (Brain Connect., 2011)

Structural MRI detects progressive regional brain atrophy and neuroprotective effects in N171-82Q Huntington's disease mouse model. - Yong Cheng; Qi Peng; Zhipeng Hou; Manisha Aggarwal; Jiangyang Zhang; Susumu Mori; Christopher A. Ross; Wenzhen Duan (NeuroImage, 2011)

An MRI-based atlas and database of the developing mouse brain. - Nelson Chuang; Susumu Mori; Akira Yamamoto; Hangyi Jiang; Xin Ye; Xin Xu; Linda J. Richards; Jeremy Nathans; Michael I. Miller; Arthur W. Toga; Richard L. Sidman; Jiangyang Zhang (NeuroImage, 2011)

Erratum to "Quantitative analysis of brain pathology based on MRI and brain atlases - Applications for cerebral palsy" [NeuroImage 54/3 (2011) 1854-1861]. - Andreia Faria; Alexander Hoon; Elaine Stashinko; Xin Li 007; Hangyi Jiang; Ameneh Mashayekh; Kazi Akhter; John T. Hsu; Kenichi Oishi; Jiangyang Zhang; Michael I. Miller; Peter C. M. van Zijl; et al. (NeuroImage, 2011)

Quantitative analysis of brain pathology based on MRI and brain atlases - Applications for cerebral palsy. - Andreia Faria; Alexander Hoon; Elaine Stashinko; Xin Li 007; Hangyi Jiang; Ameneh Mashayekh; Kazi Akhter; John T. Hsu; Kenichi Oishi; Jiangyang Zhang; Michael I. Miller; Peter C. M. van Zijl; et al. (NeuroImage, 2011)

Multi-parametric neuroimaging reproducibility: A 3-T resource study. - Bennett A. Landman; Alan J. Huang; Aliya Gifford; Deepti S. Vikram; Issel Anne L. Lim; Jonathan A. D. Farrell; John A. Bogovic; Jun Hua; Min Chen 006; Samson Jarso; Seth A. Smith; Suresh Joel; et al. (NeuroImage, 2011)

Multi-contrast human neonatal brain atlas: Application to normal neonate development analysis. - Kenichi Oishi; Susumu Mori; Pamela K. Donohue; Thomas Ernst 001; Lynn Anderson; Steven Buchthal; Andreia Faria; Hangyi Jiang; Xin Li 007; Michael I. Miller; Peter C. M. van Zijl; Linda Chang (NeuroImage, 2011)

Quantification of accuracy and precision of multi-center DTI measurements: A diffusion phantom and human brain study. - Tong Zhu; Rui Hu; Xing Qiu; Michael Taylor; Yuen Tso; Constantin T. Yiannoutsos; Bradford Navia; Susumu Mori; Sven Ekholm; Giovanni Schifitto; Jianhui Zhong (NeuroImage, 2011)

Quantitative assessment of mis-registration issues of diffusion tensor imaging (DTI). - Yue Li; Hangyi Jiang; Susumu Mori (Image Processing, 2012)

MultiCenter Reliability of Diffusion Tensor Imaging. - Vincent Magnotta; Joy T. Matsui; Dawei Liu; Hans J. Johnson; Jeffrey D. Long; Bradley D. Bolster Jr.; Bryon A. Mueller; Kelvin O. Lim; Susumu Mori; Karl G. Helmer; Jessica A. Turner; Sarah A. J. Reading; et al. (Brain Connect., 2012)

Spatiotemporal mapping of brain atrophy in mouse models of Huntington's disease using longitudinal in vivo magnetic resonance imaging. - Manisha Aggarwal; Wenzhen Duan; Zhipeng Hou; Neal Rakesh; Qi Peng; Christopher A. Ross; Michael I. Miller; Susumu Mori; Jiangyang Zhang (NeuroImage, 2012)

Atlas-based analysis of resting-state functional connectivity: Evaluation for reproducibility and multi-modal anatomy-function correlation studies. - Andreia Faria; Suresh Joel; Yajing Zhang; Kenichi Oishi; Peter C. M. van Zijl; Michael I. Miller; James J. Pekar; Susumu Mori (NeuroImage, 2012)

Cortico-Cortical, Cortico-Striatal, and Cortico-Thalamic White Matter Fiber Tracts Generated in the Macaque Brain via Dynamic Programming. - J. Tilak Ratnanather; Rakesh M. Lal; Michael An; Clare B. Poynton; Muwei Li; Hangyi Jiang; Kenichi Oishi; Lynn D. Selemon; Susumu Mori; Michael I. Miller (Brain Connect., 2013)

High-throughput neuro-imaging informatics. - Michael I. Miller; Andreia V. Faria; Kenichi Oishi; Susumu Mori (Frontiers Neuroinformatics, 2013)

Feasibility of creating a high-resolution 3D diffusion tensor imaging based atlas of the human brainstem: A case study at 11.7 T. - Manisha Aggarwal; Jiangyang Zhang; Olga Pletnikova; Barbara Crain; Juan Troncoso; Susumu Mori (NeuroImage, 2013)

Human brain atlas for automated region of interest selection in quantitative susceptibility mapping: Application to determine iron content in deep gray matter structures. - Issel Anne L. Lim; Andreia Faria; Xu Li 003; Johnny T. C. Hsu; Raag D. Airan; Susumu Mori; Peter C. M. van Zijl (NeuroImage, 2013)

In vivo high-resolution diffusion tensor imaging of the mouse brain. - Dan Wu; Jiadi Xu; Michael T. McMahon; Peter C. M. van Zijl; Susumu Mori; Frances J. Northington; Jiangyang Zhang (NeuroImage, 2013)

Tools for multiple granularity analysis of brain MRI data for individualized image analysis. - Aigerim Djamanakova; Xiaoying Tang 001; Xin Li 007; Andreia V. Faria; Can Ceritoglu; Kenichi Oishi; Argye E. Hillis; Marilyn S. Albert; Constantine Lyketsos; Michael I. Miller; Susumu Mori (NeuroImage, 2014)

Knowledge-based automated reconstruction of human brain white matter tracts using a path-finding approach with dynamic programming. - Muwei Li; J. Tilak Ratnanather; Michael I. Miller; Susumu Mori (NeuroImage, 2014)

Localized diffusion magnetic resonance micro-imaging of the live mouse brain. - Dan Wu; Dominik Reisinger; Jiadi Xu; S. Ali Fatemi; Peter C. M. van Zijl; Susumu Mori; Jiangyang Zhang (NeuroImage, 2014)

A Bayesian approach to the creation of a study-customized neonatal brain atlas. - Yajing Zhang; Linda Chang; Can Ceritoglu; Jon Skranes; Thomas Ernst 001; Susumu Mori; Michael I. Miller; Kenichi Oishi (NeuroImage, 2014)

Evaluation of group-specific, whole-brain atlas generation using Volume-based Template Estimation (VTE): Application to normal and Alzheimer's populations. - Yajing Zhang; Jiangyang Zhang; Johnny T. C. Hsu; Kenichi Oishi; Andreia Faria; Marilyn S. Albert; Michael I. Miller; Susumu Mori (NeuroImage, 2014)

A fast atlas pre-selection procedure for multi-atlas based brain segmentation. - Jingbo Ma; Heather T. Ma; Hengtong Li 001; Chenfei Ye; Dan Wu; Xiaoying Tang 001; Michael I. Miller; Susumu Mori (EMBC, 2015)

Simultaneous skull-stripping and lateral ventricle segmentation via fast multi-atlas likelihood fusion. - Xiaoying Tang 001; Kwame S. Kutten; Can Ceritoglu; Susumu Mori; Michael I. Miller (Image Processing, 2015)

Probing region-specific microstructure of human cortical areas using high angular and spatial resolution diffusion MRI. - Manisha Aggarwal; David W. Nauen; Juan C. Troncoso; Susumu Mori (NeuroImage, 2015)

Multi-site study of diffusion metric variability: characterizing the effects of site, vendor, field strength, and echo time using the histogram distance. - Karl G. Helmer; M.-C. Chou; R. I. Preciado; Barjor Gimi; N. K. Rollins; A. Song; Jessica A. Turner; Susumu Mori (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2016)

Multi-site study of diffusion metric variability: effects of site, vendor, field strength, and echo time on regions-of-interest and histogram-bin analyses. - Karl G. Helmer; M.-C. Chou; R. I. Preciado; Barjor Gimi; N. K. Rollins; A. Song; Jessica A. Turner; Susumu Mori (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2016)

MRICloud: Delivering High-Throughput MRI Neuroinformatics as Cloud-Based Software as a Service. - Susumu Mori; Dan Wu; Can Ceritoglu; Yue Li; Anthony Kolasny; Marc Vaillant; Andreia V. Faria; Kenichi Oishi; Michael I. Miller (Comput. Sci. Eng., 2016)

Resource atlases for multi-atlas brain segmentations with multiple ontology levels based on T1-weighted MRI. - Dan Wu; Ting Ma 001; Can Ceritoglu; Yue Li; Jill Chotiyanonta; Zhipeng Hou; John T. Hsu; Xin Xu; Timothy Brown; Michael I. Miller; Susumu Mori (NeuroImage, 2016)

The role of myelination in measures of white matter integrity: Combination of diffusion tensor imaging and two-photon microscopy of CLARITY intact brains. - Eric H. Chang; Miklos Argyelan; Manisha Aggarwal; Toni-Shay S. Chandon; Katherine H. Karlsgodt; Susumu Mori; Anil K. Malhotra (NeuroImage, 2017)

Multi-atlas tool for automated segmentation of brain gray matter nuclei and quantification of their magnetic susceptibility. - Xu Li 003; Lin Chen 038; Kwame S. Kutten; Can Ceritoglu; Yue Li; Ningdong Kang; John T. Hsu; Ye Qiao; Hongjiang Wei; Chunlei Liu 004; Michael I. Miller; Susumu Mori; et al. (NeuroImage, 2019)

The Japan Monkey Centre Primates Brain Imaging Repository of high-resolution postmortem magnetic resonance imaging: The second phase of the archive of digital records. - Tomoko Sakai; Junichi Hata; Yuta Shintaku; Hiroki Ohta; Kazumi Sogabe; Susumu Mori; Takako Miyabe-Nishiwaki; Hirotaka James Okano; Yuzuru Hamada; Toshiyuki Hirabayashi; Takafumi Minamimoto; Norihiro Sadato; et al. (NeuroImage, 2023)