RNAz 2.0: Improved Noncoding RNA Detection. - Andreas R. Gruber; Sven Findeiß; Stefan Washietl; Ivo L. Hofacker; Peter F. Stadler (Pacific Symposium on Biocomputing, 2010)

The primary transcriptome of the major human pathogen Helicobacter pylori. - Cynthia M. Sharma; Steve Hoffmann; Fabien Darfeuille; Jérémy Reignier; Sven Findeiß; Alexandra Sittka; Sandrine Chabas; Kristin Reiche; Jörg Hackermüller; Richard Reinhardt; Peter F. Stadler; Jörg Vogel 002 (Nat., 2010)

Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis. - Marcus Lechner; Sven Findeiß; Lydia Steiner; Manja Marz; Peter F. Stadler; Sonja J. Prohaska (BMC Bioinform., 2011)

Expanding the repertoire of bacterial (non-)coding RNAs - Sven Findeiß (2011)

TSSAR: TSS annotation regime for dRNA-seq data. - Fabian Amman; Michael T. Wolfinger; Ronny Lorenz; Ivo L. Hofacker; Peter F. Stadler; Sven Findeiß (BMC Bioinform., 2014)

RNAblueprint: flexible multiple target nucleic acid sequence design. - Stefan Hammer; Birgit Tschiatschek; Christoph Flamm; Ivo L. Hofacker; Sven Findeiß (Bioinform., 2017)

Design of Artificial Riboswitches as Biosensors. - Sven Findeiß; Maja Etzel; Sebastian Will; Mario Mörl; Peter F. Stadler (Sensors, 2017)

Rational Design of RiboNucleic Acids (Dagstuhl Seminar 22381). - Sven Findeiß; Christoph Flamm; Yann Ponty (Dagstuhl Reports, 2022)

Tailored machine learning models for functional RNA detection in genome-wide screens. - Christopher Klapproth; Siegfried Zöztsche; Felix Kühnl; Jörg Fallmann; Peter F. Stadler; Sven Findeiß (Zenodo, 2023)