StreaM - A Stream-Based Algorithm for Counting Motifs in Dynamic Graphs. - Benjamin Schiller; Sven Jager; Kay Hamacher; Thorsten Strufe (AlCoB, 2015)

StreAM- T_g : Algorithms for Analyzing Coarse Grained RNA Dynamics Based on Markov Models of Connectivity-Graphs. - Sven Jager; Benjamin Schiller; Thorsten Strufe; Kay Hamacher (WABI, 2016)

StreAM-Tg: algorithms for analyzing coarse grained RNA dynamics based on Markov models of connectivity-graphs. - Sven Jager; Benjamin Schiller; Philipp Babel; Malte Blumenroth; Thorsten Strufe; Kay Hamacher (Algorithms Mol. Biol., 2017)

Cleavage Product Accumulation Decreases the Activity of Cutinase during PET Hydrolysis. - Christine Groß 001; Kay Hamacher; Katja Schmitz; Sven Jager (J. Chem. Inf. Model., 2017)

StreaMD: Advanced analysis of molecular dynamics using R. - Maximilian J. Dombrowsky; Sven Jager; Benjamin Schiller; Benjamin E. Mayer; Sebastian Stammler; Kay Hamacher (J. Comput. Chem., 2018)

SICOR: Subgraph Isomorphism Comparison of RNA Secondary Structures. - Michael Schmidt 013; Kay Hamacher; Felix Reinhardt; Thea S. Lotz; Florian Groher; Beatrix Suess; Sven Jager (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Surface ID: a geometry-aware system for protein molecular surface comparison. - Saleh Riahi; Jae Hyeon Lee; Taylor Sorenson; Shuai Wei; Sven Jager; Reza Olfati-Saber; Yanfeng Zhou; Anna Park; Maria Wendt; Hervé Minoux; Yu Qiu (Bioinform., 2023)

Many-Shot In-Context Learning for Molecular Inverse Design. - Saeed Moayedpour; Alejandro Corrochano-Navarro; Faryad Sahneh; Shahriar Noroozizadeh; Alexander Koetter; Jiri Vymetal; Lorenzo Kogler-Anele; Pablo Mas; Yasser Jangjou; Sizhen Li; Michael Bailey; Marc Bianciotto; et al. (CoRR, 2024)

Active Learning for Protein Structure Prediction. - Zexin Xue; Michael Bailey; Abhinav Gupta; Ruijiang Li; Alejandro Corrochano-Navarro; Sizhen Li; Lorenzo Kogler-Anele; Qui Yu; Ziv Bar-Joseph; Sven Jager (RECOMB, 2025)

Distilling and exploiting quantitative insights from Large Language Models for enhanced Bayesian optimization of chemical reactions. - Roshan Patel; Saeed Moayedpour; Louis De Lescure; Lorenzo Kogler-Anele; Alan Cherney; Sven Jager; Yasser Jangjou (CoRR, 2025)