In silico design of targeted SRM-based experiments. - Sven Nahnsen; Oliver Kohlbacher (BMC Bioinform., 2012)

qPortal - A science gateway for biomedical applications. - Christopher Mohr; Andreas Friedrich; David Wojnar; Erhan Kenar; Aydin Can Polatkan; Marius Cosmin Codrea; Stefan Czemmel; Oliver Kohlbacher; Sven Nahnsen (PeerJ Prepr., 2017)

Interactive Visualization for Large-Scale Multi-factorial Research Designs. - Andreas Friedrich; Luis de la Garza; Oliver Kohlbacher; Sven Nahnsen (DILS, 2018)

Ten simple rules for providing effective bioinformatics research support. - Judit Kumuthini; Michael Chimenti; Sven Nahnsen; Alexander Peltzer; Rebone Meraba; Ross McFadyen; Gordon Wells; Deanne M. Taylor; Mark Maienschein-Cline; Jian-Liang Li; Jyothi Thimmapuram; Radha Murthy-Karuturi; et al. (PLoS Comput. Biol., 2020)

Sustainable data analysis with Snakemake. - Felix Mölder; Kim Philipp Jablonski; Brice Letcher; Michael B. Hall; Christopher Tomkins-Tinch; Vanessa V. Sochat; Jan Forster; Soohyun Lee; Sven Twardziok; Alexander Kanitz; Andreas Wilm; Manuel Holtgrewe; et al. (F1000Research, 2021)

ODGI: understanding pangenome graphs. - Andrea Guarracino; Simon Heumos; Sven Nahnsen; Pjotr Prins; Erik Garrison (Bioinform., 2022)

A data management infrastructure for the integration of imaging and omics data in life sciences. - Luis Kuhn Cuellar; Andreas Friedrich; Gisela Gabernet; Luis de la Garza; Sven Fillinger; Adrian Seyboldt; Tobias Koch; Sven zur Oven-Krockhaus; Friederike Wanke; Sandra Richter; Wolfgang Maximilian Thaiss; Marius Horger; et al. (BMC Bioinform., 2022)

mlf-core: a framework for deterministic machine learning. - Lukas Heumos; Philipp Ehmele; Luis Kuhn Cuellar; Kevin Menden; Edmund Miller; Steffen Lemke 003; Gisela Gabernet; Sven Nahnsen (Bioinform., 2023)

nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework. - Gisela Gabernet; Susanna Marquez; Robert Bjornson; Alexander Peltzer; Hailong Meng; Edel Aron; Noah Y. Lee; Cole G. Jensen; David Ladd; Mark Polster; Friederike Hanssen; Simon Heumos; et al. (PLoS Comput. Biol., 2024)